2016 Publications
2016 Scientific Publications Based on Studies Conducted
Mainly by LifeSci or with Contribution From LifeSci
Aytaç-Kipergil, E., Demirkıran, A., Uluç, N., et al., “Development of a Fiber Laser with
Independently Adjustable Properties for Optical Resolution Photoacoustic Microscopy”,
Scientific Reports, 6, 38674, 2016.
Avcı, F.G., Altınışık, F.E., Vardar Ulu, D., et al., “An Evolutionarily Conserved Allosteric Site
Modulates Beta-Lactamase Activity”, Journal of Enzyme Inhıbıtion and Medicinal
Chemistry, 31, 3, 33-40, 2016.
Jiang, N., Sendoğdular, L., Şen, M., et al., “Novel Effects of Compressed CO2 Molecules on
Structural Ordering and Charge Transport in Conjugated Poly(3-hexylthiophene) Thin
Films”, Langmuir, 32, 42, 10851-10860, 2016.
Nouizi, F., Erkol, H., Luk, A., et al., “An Accelerated Photo-Magnetic İmaging Reconstruction
Algorithm Based on an Analytical Forward Solution and a Fast Jacobian Assembly Method”,
Physics in Medicine and Biology, 61, 20, 7448-7465, 2016.
Eren, T.N., Ökte, N., Morlet-Savary, F., et al., “One-Component Thioxanthone-Based Polymeric
Photoinitiators”, Journal of Polymer Science Part A-Polymer
Chemistry, 54, 20, 3370-3378, 2016.
Sun, L., Akgün, B., Narayanan, S., et al., “Surface Fluctuations of Polymer Brushes Swollen in Good
Solvent Vapor”,Macromolecules , 49,19, 7308-7313, 2016.
Alaybeyoğlu, B., Duranel, A., Özkırımlı, E., “ Uptake Mechanism of the Cell-Penetrating Peptide
pVEC: How Does the Hydrophobic N-terminus Contribute?”, Conference: 30th Anniversary
Symposium of the Protein-Society Location: Baltimore, Sponsor(s): Protein Soc
Protein Science, 25, S1, 121-122, 2016.
Nouizi, F., Erkol, H., Luk, A., et al., “Real-Time Photo-Magnetic İmaging”, Biomedical Optics
Express, 7, 10, 3899-+, 2016.
Özaltın, T., Furuncuoğlu, K., Berkehan, Çatak, Ş., et al., “Effect of Lewis acids on the
Stereoregularity of N,N-dimethyl acrylamide: A computational Approach”, European
Polymer Journal, 83, 67-76, 2016.
Dikici, E., Saraçlar, M., “Semi-Supervised And Unsupervised Discriminative Language Model
Training For Automatic Speech Recognition”, Speech Communıcation, 83, 54-63, 2016.
Pamuk, U., Karakuzu, A., Öztürk, C., et al., “Combined Magnetic Resonance and Diffusion Tensor
İmaging Analyses Provide aPowerful Tool for in Vivo Assessment of Deformation Along
Human Muscle Fibers”, Journal of The Mechanical Behavior of Biomedical Materials, 63,
207-219, 2016.
Çınar, S.A., Güven, M.N., Eren, T.N., et al., “Structure-Reactivity Relationships of Novel Monomeric
Photoinitiators”, Journal of Photochemistry and Photobıology A-Chemistry, 329, 77-87,
2016.
Johannesen, K., Marini, C., Pfeffer, S., et al., “Phenotypic Spectrum of GABRA1: From Generalized
Epilepsies to Severe Epileptic Encephalopathies”, Neurology, 87, 11, 1140-1151, 2016.
Yasa, S., Sahillioğlu, A.C., Özören, N., “The ASC Speck as Novel Antigen Carrier Conference: 41st
FEBS Congress on Molecular and Systems Biology for a Better Life Location”, Kuşadası,
Turkey, Date: SEP 03-08, 2016, Sponsor(s): Febs Journal, 283, SI, 1, 112-112, Meeting
Abstract, 2016.
Acuner-Özbabacan, S.E., Sümbül, F., Torun, H., et al., “Mutation İnduced Allosteric Regulation of
Rac1-PAK1 Binding Affinity İnvestigated Via Molecular Simulations and AFM”,
Conference: 41st FEBS Congress on Molecular and Systems Biology for a Better
Life Location: Kusadasi, TURKEY, Sponsor(s): Febs Journal, 283, SI, 1, 113-113, Meeting
Abstract, 2016.
Yıldız, N., Ayhan, M.C., Emre, N.C.T., “Investigating The Role of İnterferon Regulatory Factor 4 in
Melanoma Cell Lines”, Conference: 41st FEBS Congress on Molecular and Systems Biology
for a Better Life Location: Kusadasi, Turkey, Sponsor(s):, Febs Journal, 283, SI, 1,
255-255, Meeting Abstract, 2016.
Sobhiafshar, U., Yılmaz, E., Emre, N.C.T., “Identification and Analysis of İnterferon Regulatory
Factor 4 Target Genes in Melanoma Via High-Throughput Sequencing of
İmmunoprecipitated Chromatin”, Conference: 41st FEBS Congress on Molecular and
Systems Biology for a Better Life Location: Kuşadası, Turkey, Sponsor(s):Febs Journal, 283,
SI, 1, 258-258, Meeting Abstract, 2016.
Yıldız, F., Gülsoy, M., Çilesiz, I., “5 An Experimental Study on Photothermal Damage to Tissue: The
Role of İrradiance and Wavelength”, Laser Physics, 26, 9, 2016.
Özmen-Okur, Ö., Öztürk, C., “Effects of Unmodulation and Thresholding by Average-Based
Masking on Voxel-Based Morphometry”, Journal of Medıcal Imagıng and Health
Informatics, 6, 5, 1178-1185, 2016.
Dündar, G., Horta, N., Fernandez, F.V., “Introduction to the Special Issue on SMACD 2015”,
Integration-The Vlsi Journal, 55, SI, 293-294, 2016.
Afacan, E., Berkol, G., Dündar, G., et al., “A Lifetime-Aware Analog Circuit Sizing Tool”,
Integration-The Vlsi Journal, 55, SI, 349-356, 2016.
Pak, M., Fernandez, F.V., Dündar, G., “Comparison of QMC-Based Yield-Aware Pareto Front
Techniques for Multi-Objective Robust Analog Synthesis”, Integratıon-The Vlsı Journal, 55,
SI, 357-365, 2016.
Sağlamdemir, M.O., Berkol, G., Dündar, G., et al., “An Analog Behavioral Equivalence Boundary
Search Methodology for Simulink Models and Circuit Level Designs Utilizing Evolutionary
Computation”, Integratıon-The Vlsı Journal, 55, SI, 366-375, 2016.
Kürkçüoğlu, Z., Bahar, I., Doruker, P., “ClustENM: ENM-Based Sampling of Essential
Conformational Space at Full Atomic Resolution”, Journal of Chemical Theory and
Computation, 12, 9, 4549-4562, 2016.
Çetinkaya-Fisgin, A., Joo, M.G., Ping, X., et al., “Identification of Fluocinolone Acetonide to Prevent
Paclitaxel-İnduced Peripheral Neuropathy”, Journal of the Perıpheral Nervous System, 21,
3, 128-133, 2016.
Akçay, H., Durmuş, H., Deymeer, F., et al., “Charcot-Marıe-Tooth Disease in Turkey: Clinical and
Genetic Findings from a Single-Centre Experience”, Conference: Inflammatory Neuropathy
Consortium and GBS 100 Centenary Symposium and Ceilidh Location: Univ Glasgow,
Glasgow, SCOTLAND Date: JUN 21-24, 2016, Sponsor(s): Baxalta; CSL Behring; Grifols;
Kedrion S p A; GBS CIDP Fdn Int; Guillain Barre Associated Inflammatory Neuropathies;
LFB Biomedicaments; Octapharma; Teva Journal of the Peripheral Nervous System, 21, 3,
230-231, 2016.
Battaloğlu, E., Estrada-Cuzcano, A., Atkinson, D., et al., “Spg11 Is an Overlappıng Gene Between
Charcot-Marie-Tooth Disease and Hereditary Spastic Paraplegia”,Conference: Inflammatory
Neuropathy Consortium and GBS 100 Centenary Symposium and Ceilidh Location: Univ
Glasgow, Glasgow, SCOTLAND Date: JUN 21-24, 2016, Sponsor(s): Baxalta; CSL Behring;
Grifols; Kedrion S p A; GBS CIDP Fdn Int; Guillain Barre Associated Inflammatory
Neuropathies; LFB Biomedicaments; Octapharma; Teva Journal of the Perıpheral Nervous
System, 21, 3, 238-239, 2016.
Candayan, A., Sıvacı, M., Parman, Y., et al., “Mitofusin 2 Gene Mutations in a Turkish Charcot
Marie-Tooth Disease Cohort”, Conference: Inflammatory Neuropathy Consortium and GBS
100 Centenary Symposium and Ceilidh Location: Univ Glasgow, Glasgows,
SCOTLAND Date: JUN 21-24, 2016, Sponsor(s): Baxalta; CSL Behring; Grifols; Kedrion S p A;
GBS CIDP Fdn Int; Guillain Barre Associated Inflammatory Neuropathies; LFB
Biomedicaments; Octapharma; Teva Journal of the Peripheral Nervous System, 21, 3,
242-242, 2016.
Erol, A.M., Kılıç, A.K., Çelik, A., et al., ”Brait-Fahn-Schwarz Disease: Parkinson's Disease and
Amyotrophic Lateral Sclerosis Complex”, Acta Neurologica Belgica, 116, 3, 401-403, 2016.
Mavioğlu, R.N., Duman, E.A., “Changes in HPA-Axis Reactivity By Subjective Well-Being: Impact of
Loneliness, Gender and Serotonin Transporter Genotype”, Conference: 46th Annual
Conference of the International-Society-of-Psychoneuroendocrinology - Personalized
Medicine in the Neurosciences - Genetics, Imaging, and Hormones Location: Miami,
FL Date: SEP 08-11, 2016, Sponsor(s): Int Soc Psychoneuroendocrinol
Psychoneuroendocrinology, 71, S, 17-18, 2016.
Ergin, K.C., Dedeoğlu, G., Duman, E.A., Interaction Between Childhood Maltreatment, Trait
Anxiety and Serotonin Transporter Genotype on Cortisol Awakening Response”,
Conference: 46th Annual Conference of the International-Society-of-
Psychoneuroendocrinology - Personalized Medicine in the Neurosciences - Genetics,
Imaging, and Hormones Location: Miami, FL Date: SEP 08-11, 2016, Sponsor(s): Int Soc
Psychoneuroendocrinol Psychoneuroendocrınology, 71, S, 30-31, 2016.
Adıyan, U., Çivitçi, F., Ferhanoğlu, O., et al., “A Prism-Based Optical Readout Method for MEMS
Bimaterial Infrared Sensors”, IEEE Photonics Technology Letters, 28, 17, 1866-1869, 2016.
Turan, H.T., Eken, Y., Marazzi, M., et al., “Assessing One- and Two-Photon Optical Properties of
Boron Containing Arenes”, journal of physical chemistry, 120, 32, 17916-17926, 2016.
Öz, Y., Arslan, M., Gevrek, T.N., et al., “Modular Fabrication of Polymer Brush Coated Magnetic
Nanoparticles: Engineering the Interface for Targeted Cellular Imaging”, ACS Applied
Materials & Interfaces, 8, 30, 19813-19826, 2016.
Mignot, Cyril; von Stuelpnagel, Celina; Nava, Caroline; et al., “Genetic and Neurodevelopmental
Spectrum of SYNGAP1-Associated Intellectual Disability and Epilepsy”, Group
Author(s): Euro Epinomics-Res Mae Working Grp, Journal of Medical Genetics, 53, 8,
511-522, 2016.
Yavuz, B., Pehlivan, S., B., Bolu, B.S., et al., “Dexamethasone - PAMAM Dendrimer Conjugates for
Retinal Delivery: Preparation, Characterization and in Vivo Evaluation”, Journal of
Pharmacy and Pharmacology, 68 , 8, 1010-1020, 2016.
Kwong, T.C., Hsing, M., Lin, Y., et al., “Differentiation of Tumor Vasculature Heterogeneity Levels
in Small Animals Based on Total Hemoglobin Concentration Using Magnetic Resonance
Guided Diffuse Optical Tomography in Vivo”, Applied Optics, 55, 21, 5479-5487, 2016.
Özgür, C., Doruker, P., Akten, E.D., “Investigation of Allosteric Coupling in Human Beta(2)-
Drenergic Receptor in The Presence of İntracellular Loop 3”, BMC Structural Biology, 16, 9,
2016.
Afacan, E., Berkol, G., Dündar, G., et al., “An Analog Circuit Synthesis Tool Based on Efficient and
Reliable Yield Estimation”, Microelectronics Journal, 54, 14-22, 2016.
Eren, T.N., Yaşar, N., Aviyente, V., et al., “Photophysical and Photochemical Studies of Novel
Thioxanthone-Functionalized Methacrylates through LED Excitation”, Macromolecular
Chemistry and Physics, 217, 13, 1501-1512, 2016.
Usluer, S., Salar, S., Arslan, M., et al., “SCN1A Gene Sequencing in 46 Turkish Epilepsy Patients
Disclosed 12 Novel Mutations”, Seizure-European Journal of Epilepsy, 39, 34-43, 2016.
Duru, I., Ege, D., Kamali, A.R., “Graphene Oxides For Removal of Heavy and Precious Metals From
Wastewater”, Journal of Materials Science, 51,13, 6097-6116, 2016.
Kürkçüoğlu, Z., Doruker, P., “Ligand Docking to Intermediate and Close-To-Bound Conformers
Generated by an Elastic Network Model Based Algorithm for Highly Flexible Proteins”, Plos
One, 11, 6, 2016.
Bilgin, R., Ebeoğlu, N., Inak, S., et al., “DNA Barcoding of Birds at a Migratory Hotspot in Eastern
Turkey Highlights Continental Phylogeographic Relationships”, Plos One, 11, 6, 2016.
Bilgin, Habib; Zahertar, Shahrzad; Sadeghzadeh, Seyedehayda; et al., “A MEMS-Based Terahertz
Detector With Metamaterial-Based Absorber and Optical İnterferometric Readout”,
Conference: EUROSENSORS Conference Location: Freiberg, GERMANY Date: SEP 06-09,
2015 Sensors and Actuators A-Physical, 244, 292-298, 2016.
Sun, L., Akgün, B., Hu, R., et al., “Scaling Behavior and Segment Concentration Profile of Densely
Grafted Polymer Brushes Swollen in Vapor”, Langmuır, 32, 22, 5623-5628, 2016.
Sevim, S., Shamsudhin, N., Özer, S., et al., “An Atomic Force Microscope with Dual Actuation
Capability for Biomolecular Experiments”, Scıentific Reports, 6, 2016.
Demirkan, I., Sarp, A., Kabas, S., Gülsoy, M., “Ceramic Bracket Debonding With Tm:Fiber Laser”,
Journal of Biomedical Optics, 21, 6, 2016.
Kalaoğlu-Altan, Ö.I., Verbraeken, B., Lava, K., et al., “Multireactive Poly(2-oxazoline) Nanofibers
through Electrospinning with Crosslinking on the Fly”, Acs Macro Letters, 5, 6, 676-681,
2016.
Tanrıver, G., Dedeoğlu, B., Çatak, Ş., et al., “Computational Studies on Cinchona Alkaloid
Catalyzed Asymmetric Organic Reactions”, Accounts of Chemical Research, 49, 6, 1250-
1262, 2016.
Kancheva, D., Atkinson, D., De Rijk, P., et al., “Novel Mutations in Genes Causing Hereditary
Spastic Paraplegia and Charcot-Marie-Tooth Neuropathy İdentified by an Optimized
Protocol for Homozygosity Mapping Based on Whole-Exome Sequencing”,
Genetics in Medicine, 18, 6, 600-607, 2016.
Ateş, F., Temelli, Y., Yücesoy, C.A., “The Mechanics of Activated Semitendinosus Are Not
Representative of the Pathological Knee Joint Condition of Children with Cerebral Palsy”,
Journal of Electromyography and Kinesiology, 28, 130-136, 2016.
Bilgin, R., Gürün, K., Rebelo, H., et al., “Circum-Mediterranean Phylogeography of a Bat Coupled
with Past Environmental Niche Modeling: A New Paradigm for the Recolonization of
Europe?”, Molecular Phylogenetics and Evolution, 99, 323-336, 2016.
Türkoğlu, A.N., Yücesoy, C.A., “Simulation of Effects of Botulinum Toxin on Muscular Mechanics
in Time Course of Treatment Based on Adverse Extracellular Matrix Adaptations”, Journal
of Biomechanics, 49, 7, 1192-1198, 2016.
Bolu, B.S., Gecici- Manavoglu, E., Sanyal, R., “Combretastatin A-4 Conjugated Antiangiogenic
Micellar Drug Delivery Systems Using Dendron-Polymer Conjugates”, Molecular
Pharmaceutics, 13, 5, 1482-1490, 2016.
Çevrim, Ç., Mika, K., Callaerts, P., et al., “Unzipped Mediates Drosophila Mushroom Body
Development Through Neuron-Glia İnteractions.”, Conference: 25th Annual Meeting of the
European-Chemoreception-Research-Organization (ECRO) Location: Bogazici Univ,
Istanbul, Turkey, Date: SEP 01-05, 2015, Sponsor(s): European Chemorecept Res Org,
Chemical Senses, 41, 4, 403-404, 2016.
Ertekin, E., Hatt, J., Konstantinidis, K., Konstantinos, T., et al. “Similar Microbial Consortia and
Genes Are Involved in the Biodegradation of Benzalkonium Chlorides in Different
Environments”, Environmental Science & Technology, 50, 8, 4304-4313, 2016.
Wang, W., Xu, Y., Backes, S., et al., “Construction of Compact Polyelectrolyte Multilayers Inspired
by Marine Mussel: Effects of Salt Concentration and pH As Observed by QCM-D and AFM”,
Langmuir, 32, 14, 3365-3374, 2016.
Kaga, S., Arslan, M., Sanyal, R., et al.,”Dendrimers and Dendrons as Versatile Building Blocks for
the Fabrication of Functional Hydrogels”, Molecules, 21, 4, 497, 2016.
Kaga, S., Gevrek, T.N., Sanyal, A., et al., “Synthesis and Functionalization of Dendron-Polymer
Conjugate Based Hydrogels via Sequential Thiol-Ene "Click" Reactions”, Journal of Polymer
Science Part A-Polymer Chemistry, 54, 7, 926-934, 2016.
Öztürk, H., Özkırımlı, E., Özgür, A., “A Comparative Study of SMILES-Based Compound Similarity
Functions for Drug-Target İnteraction Prediction”, Bmc Bioinformatics , 17, 128, 2016.
Akkan, Ç.K., Hür, D., Uzun, L., et al., “Amino Acid Conjugated Self Assembling Molecules for
Enhancing Surface Wettability of Fiber Laser Treated Titanium Surfaces”, Applied Surface
Science, 366, 284-291, 2016.
Torun, H., Sadeghzadeh, S., Bilgin, H., et al., “A Micromachined Freestanding Terahertz Absorber
with an Array of Metallic Patches”, Aip Advances, 6, 3, 2016.
Topaloğlu, N., Güney, M., Aysan, N., et al., “The Role of Reactive Oxygen Species in the
Antibacterial Photodynamic Treatment: Photoinactivation Vs Proliferation”, Letters in
Applied Microbiology, 62, 3, 230-236, 2016.
Acuner-Özbabacan, S.E., Sumbul, F., Torun, H., et al., “Allosteric Regulation of Rac1-PAK1 Binding
Affinity by Mutant Residues through Molecular Simulations and AFM”, Conference: 60th
Annual Meeting of the Biophysical-Society Location: Los Angeles, CA Date: FEB 27-MAR 02
2016, Sponsor(s): Biophys Soc, Biophysical Journal, 110, 3, 1, 383A-383A, Meeting
Abstract: 1891-Pos, 2016.
Çirkinoğlu, H.O., Bilgin, H., Çivitçi, F., et al., “Fiber Temperature Sensor Utilizing a
Thermomechanical MEMS Detector”, Journal of Lightwave Technology, 34, 3,1025-1030,
2016.
Güveli, Ş., Çınar, S.A., Karahan, Ö., et al. “Nickel(II)-PPh3 Complexes of S,N-Substituted
Thiosemicarbazones - Structure, DFT Study, and Catalytic Efficiency”, European Journal of
Inorganic Chemistry, 4, 538-544, 2016.
Afacan, E., Dündar, G., Pusane, A.E., et al., “Semi-Empirical Aging Model Development Via
Accelerated Aging Test”, Book Group Author(s): IEEE Conference: 13th International
Conference on Synthesis, Modeling, Analysis and Simulation Methods and Applications to
Circuit Design (SMACD) Location: Lisbon, Portugal Date: JUN 27-30, 2016.
Afacan, E., Dündar, G., Pusane, A.E., et al., “Efficient Signature Selection Tool for Sense & React
Systems”, Book Group Author(s): IEEE Conference: 13th International Conference on
Synthesis, Modeling, Analysis and Simulation Methods and Applications to Circuit Design
(SMACD) Location: Lisbon, Portugal Date: JUN 27-30, 2016.
Batur, O.Z., Dündar, G., Koca, M., “MATLAB & VHDL-AMS Co-Simulation Environment for IR-UWB
Transceiver Design”, Book Group Author(s): IEEE Conference: 13th International
Conference on Synthesis, Modeling, Analysis and Simulation Methods and Applications to
Circuit Design (SMACD) Location: Lisbon, PORTUGAL Date: JUN 27-30, 2016.Bottom of Form
Demir, K., Bilgin, H., Şahin, A.B., et al., “Design of a Frequency Reconfigurable, Terahertz Antenna
for Photomixers”, Book Group Author(s): IEEE Conference: 41st International Conference
on Infrared, Millimeter, and Terahertz Waves (IRMMW-THz) Location: Copenhagen,
Denmark Date: SEP 25-30, 2016. Sponsor(s): DTU; IEEE; QMC Instruments; Danish Ct
Laser Infrastructure; DTU Fotonik, Dept Photon Engn; ARL; CARLSBERG FDN; AF OFF SCI
RES; Tech Univ Denmark; IEEE Microwave Theory & Tech Soc; Azpect Photon; Ekspla;
Hubner HF Syst Engn; I2S; Laser Quantum; Menlo Syst; Neaspec; Springer; TeraView,
Virginia Diodes 2016 41st Internatıonal Conference on Infrared, Mıllımeter, and Terahertz
Waves (Irmmw-Thz) Book Series: International Conference on Infrared Millimeter and
Terahertz Waves Published: 2016
Sari, L., Saraçlar, M., “Score Normalization for Keyword Search”, Book Group Author(s): IEEE
Conference: 24th Signal Processing and Communication Application Conference
(SIU) Location: Zonguldak, Turkey Date: MAY 16-19, 2016 Sponsor(s): IEEE; Bulent Ecevit
Univ, Dept Elect & Elect Engn; Bulent Ecevit Univ, Dept Biomed Engn; Bulent Ecevit Univ,
Dept Comp Engn., 761-764, 2016.
Gündoğdu, B., Sarı, L., Çetinkaya, G., et al., “Template-Based Keyword Search with Pseudo
Posteriorgrams”, Book Group Author(s): Sponsor(s): IEEE; Bulent Ecevit Univ, Dept Elect &
Elect Engn; Bulent Ecevit Univ, Dept Biomed Engn; Bulent Ecevit Univ, Dept Comp Engn
2016 24th Signal Processing and Communication Application Conference
(SIU), 973-976, 2016.
Çamlı, B., Kuşakçı, E., Lafçı, B., et al., “A Microwave Ring Resonator Based Glucose Sensor”, Edited
by: Barsony, I., Zolnai, Z., Battistig, G., Conference: 30th Eurosensors
Conference Location: Budapest, HUNGARY Date: SEP 04-07, 2016
Proceedings of the 30th Anniversary Eurosensors Conference - Eurosensors 2016 Book
Series: Procedia Engineering Volume: 168 Pages: 465-468 Published: 2016.
Cirkinoğlu, H.O., Bilgin, H., Çivitçi, F., et al., “Fiber Temperature Sensor Utilizing A
Thermomechanical MEMS Detector”, Edited by: Yin, S; Guo, R., Conference: Conference on
Photonic Fiber and Crystal Devices - Advances in Materials and Innovations in Device
Applications X Location: San Diego, CADate: AUG 28-29, 2016. Sponsor(s): Spı
Photonıc Fıber and Crystal Devıces: Advances in Materıals and Innovatıons in Devıce
Applications X, Book Series: Proceedings of SPIE, 9958, 2016.
Altındağ, E., Usluer, S., Gündoğdu, A., et al., “Late-Onset Myoclonic Epilepsy in Down Syndrome:
Investigation of EPM1 Gene Mutations in two Cases”, Journal of Neurological Sciences
Turkish, 33, 1, 132-137, 2016.
Cagavi, E., Özören, N., “Editorial "Stem Cells: Biology, Genetics, and Epigenetics", Turkish Journal
of Biology, 40, 5, I-II, 2016.
Gökbulut, B., Inci, M.N., “An Interferometric Vibration Sensor Based on a Four-core Optical
Fiber”, Edited by: Berghmans, F., Mignani, A.G., Conference: Conference on Optical Sensing
and Detection IV Location: Brussels, Belgium Date: APR 03-07, 2016, Sponsor(s): SPIE;
Brussels Photon Team; Res Fdn Flanders; Visit Brussels Optical Sensing and Detection
IV, Book Series: Proceedings of SPIE, 9899, Article Number: UNSP 989920-1, 2016.
Vardar, Y., Güçlü, B., Başdoğan, Ç., “Effect of Waveform in Haptic Perception of Electrovibration
on Touchscreens”, Edited by: Bello, F., Kajimoto, H., Visell, Y., Conference: 10th International
Conference on Haptics - Perception, Devices, Control, and Applications
(EuroHaptics) Location: Imperial Coll London, London, England Date: JUL 04-07, 2016
Sponsor(s): CEA; EPSRC UK RAS Network; Force Dimens; Lofelt; Moog; Shadow Robot;
Valeo; Gener Robot; Haption; Optoforce Ltd; Prototouch; Actronika; Disney Res; IET Robot
& Mechatron TPN; Springer; Ocado Technol; Right Hand Robot; Tactile Labs Inc; Tanvas
Haptics: Perception, Devices, Control and Applications, Eurohaptics 2016, PT I Book
Series: Lecture Notes in Computer Science, 9774, 190-203, 2016.
Alma, U.A., Ilkhani, G., Samur, E., “On Generation of Active Feedback with Electrostatic
Attraction”, Edited by: Bello, F., Kajimoto, H., Visell, Y., Conference: 10th International
Conference on Haptics - Perception, Devices, Control, and Applications
(EuroHaptics) Location: Imperial Coll London, London, England Date: JUL 04-07, 2016,
Sponsor(s): CEA; EPSRC UK RAS Network; Force Dimens; Lofelt; Moog; Shadow Robot;
Valeo; Gener Robot; Haption; Optoforce Ltd; Prototouch; Actronika; Disney Res; IET Robot
& Mechatron TPN; Springer; Ocado Technol; Right Hand Robot; Tactile Labs Inc; Tanvas
Haptics: Perception, Devices, Control and Applications, Eurohaptıcs 2016, PT II Book
Series: Lecture Notes in Computer Science, 9775, 449-458, 2016.
Afacan, E., Dündar, G., “A Mixed Domain Sizing Approach for RF Circuit Synthesis”, Edited
by: Brenkus, J., Stopjakova, V., Conference: IEEE 19th International Symposium on Design
and Diagnostics of Electronic Circuits & Systems (DDECS) Location: Kosice,
Slovakia Date: APR 20-22, 2016, Sponsor(s): IEEE Council Elect Design Automat; IEEE
Comp Soc; Slovak Univ. Technol, Fac Elect Engn & Informat Technol; Slovak Univ Technol,
Fac Informat & Informat Technologies; Slovak Acad Sci, Inst Informat 2016 IEEE 19th
International Symposium on Design and Diagnostics of Electronic Circuits & Systems
(DDECS) Book Series: IEEE International Symposium on Design and Diagnostics of
Electronic Circuits & Systems, 80-83, 2016.
Sevim, S., Özer, S., Feng, L., et al., “Dually Actuated Atomic Force Microscope with Miniaturized
Magnetic Bead-Actuators for Single-Molecule Force Measurements”, Nanoscale Horizons, 1,
6, 488-495, 2016.
Alaybeyoğlu, B., Akbulut, B.S., Özkırımlı, E., “Insights into Membrane Translocation of the Cell
Penetrating Peptide Pvec From Molecular Dynamics Calculations”, Journal of Biomolecular
Structure & Dynamics, 34, 11, 2387-2398, 2016.
Kösoğlu, G., Yüksel, H., İnci, M.N., “3D Phase Stepping Optical Profilometry Using a Fiber Optic
Lloyd's Mirror”, Edited by: Schelkens, P., Ebrahimi, T., Cristobal, G., et al.,
Conference: Conference on Optics, Photonics and Digital Technologies for Imaging
Applications IV Location: Brussels, Belgium Date: APR 05-06, 2016, Sponsor(s): SPIE;
Brussels Photon Team; Res Fdn Flanders; Visit Brussels, Optics, Photonics and Digital
Technologies for Imaging Applications IV Book Series: Proceedings of SPIE, 9896, 2016.
Işeri, E., Ülgen, K.O., Yılmaz, Ç., et al., “Fabrication of Steel Displacement Amplifiers Integrated to
Microfluidic Channels”, Book Group Author(s): IEEE Conference: 29th IEEE International
Conference on Micro Electro Mechanical Systems (MEMS) Location: Shanghai, PEOPLES R
CHINA Date: JAN 24-28, 2016, Sponsor(s): IEEE; IEEE Robot & Automat Soc
2016 IEEE 29th International Conference on Micro Electro Mechanical Systems (MEMS),
Book Series: Proceedings IEEE Micro Electro Mechanical Systems, 493-496, 2016.
Altınbaşak, I., Sanyal, R., Sanyal, A., “Best of Both Worlds: Diels-Alder Chemistry Towards
Fabrication of Redox-Responsive Degradable Hydrogels for Protein Release”, RSC
Advances, 6, 78, 74757-74764, 2016.
Alagha, H.Z., Gülsoy, M., “Photothermal Ablation of Liver Tissue with 1940-Nm Thulium Fiber
Laser: An Ex Vivo Study on Lamb Liver”, Journal of Biomedical Optics, 21, 1, 2016.
Uğur, G., Akgün, B., Jiang, Z., et al., “Effect of Tethering on The Surface Dynamics of a Thin
Polymer Melt Layer”, Soft Matter, 12, 24, 5372-5377, 2016.
Erkol, H., Nouizi, F., Luk, A.T., et al. “A New Analytical Approach for Heat Generation in Tissue
Due to Laser Excitation (Conference Presentation)”, Edited by: Jansen, ED
Conference: Conference on Optical Interactions with Tissue and Cells XXVII Location: San
Francisco, CA Date: FEB 14-17, 2016, Sponsor(s): SPIE, Optical Interactions with Tissue
and Cells XXVII Book Series: Proceedings of SPIE, 9706, 2016.
Kaya, Ö., Gülsoy, M., “A Non-Contact Temperature Measurement System for Controlling
Photothermal Medical Laser Treatments”, Edited by: Jansen, E.D., Conference: Conference
on Optical Interactions with Tissue and Cells XXVII Location: San Francisco, CA Date: FEB
14-17, 2016, Sponsor(s): SPIE Optical Interactions With Tissue and Cells XXVII Book
Series: Proceedings of SPIE, 9706, 2016.
Ruhi, M.K., Ak, A., Gülsoy, M., “Efficiency of Photodynamic Therapy Using İndocyanine Green and
İnfrared Light on MCF-7 Breast Cancer Cells in Vitro”, Edited by: Kessel, D.H., Hasan, T.,
Conference: Conference on Optical Methods for Tumor Treatment and Detection -
Mechanisms and Techniques in Photodynamic Therapy XXV Location: San Francisco,
CA Date: FEB 13-14, 2016, Sponsor(s): SPIE, Optical Methods for Tumor Treatment and
Detection: Mechanisms and Technıques in Photodynamic Therapy XXV, Book
Series: Proceedings of SPIE, 9694, 2016.
Eribol, P., Uğuz, A.K., Ülgen, K.O., “Screening Applications in Drug Discovery Based on
Microfluidic Technology”, Biomicrofluidics, 10, 1, 2016.
Sarp, A.S., Gülsoy, M., “Comparing Irradiation Parameters on Disinfecting Enterrecoccus Faecalis
in Root Canal Disinfection”, Edited by: Rechmann, P., Fried, D., Conference: Conference on
Lasers in Dentistry XXII Location: San Francisco, CA Date: FEB 14, 2016, Sponsor(s): SPIE
Lasers in Dentistry XXII Book Series: Proceedings of SPIE, 9692, 2016.
Akcan, S., “Novice Non-Native English Teachers' Reflections on Their Teacher Education
Programmes and Their First Years of Teaching”, Profıle-Issues in Teachers Professional
Development, 18, 1, 55-70, 2016.
Yıldırım, A., Türkaydın, M., Garipcan, B., et al., “Cytotoxicity of Multifunctional Surfactant
Containing Capped Mesoporous Silica Nanoparticles”,RSC
Advances, 6, 38, 32060-32069, 2016.
Deniz, U., Özkırımlı, E., Ülgen, K.O., “A Systematic Methodology for Large Scale Compound
Screening: A Case Study on the Discovery of Novel S1PL İnhibitors”, Journal of Molecular
Graphics & Modelling, 63, 110-124, 2016.
Kömürcü, G. Pusane, A.E., Dündar, G., “Effects of Aging and Compensation Mechanisms in
Ordering Based RO-PUFs”, Integration-The Visi Journa, 52, 71-76, 2016.
