2016 Publications

2016 Scientific Publications Based on Studies Conducted 

Mainly by LifeSci or with Contribution From LifeSci 

Aytaç-Kipergil, E., Demirkıran, A., Uluç, N., et al., “Development of a Fiber Laser with

          Independently Adjustable Properties for Optical Resolution Photoacoustic Microscopy”,

          Scientific Reports, 6, 38674, 2016.

Avcı, F.G., Altınışık, F.E., Vardar Ulu, D., et al., “An Evolutionarily Conserved Allosteric Site

          Modulates Beta-Lactamase Activity”, Journal of Enzyme Inhıbıtion and Medicinal

          Chemistry, 31, 3, 33-40, 2016.

Jiang, N., Sendoğdular, L., Şen, M., et al., “Novel Effects of Compressed CO2 Molecules on

          Structural Ordering and Charge Transport in Conjugated Poly(3-hexylthiophene) Thin

          Films”, Langmuir, 32, 42, 10851-10860, 2016.

Nouizi, F., Erkol, H., Luk, A., et al., “An Accelerated Photo-Magnetic İmaging Reconstruction

          Algorithm Based on an Analytical Forward Solution and a Fast Jacobian Assembly Method”,

          Physics in Medicine and Biology, 61, 20, 7448-7465, 2016.

Eren, T.N., Ökte, N., Morlet-Savary, F., et al., “One-Component Thioxanthone-Based Polymeric

          Photoinitiators”, Journal of Polymer Science Part A-Polymer

          Chemistry, 54, 20, 3370-3378, 2016.

Sun, L., Akgün, B., Narayanan, S., et al., “Surface Fluctuations of Polymer Brushes Swollen in Good

          Solvent Vapor”,Macromolecules , 49,19, 7308-7313, 2016.

Alaybeyoğlu, B., Duranel, A., Özkırımlı, E., “ Uptake Mechanism of the Cell-Penetrating Peptide

          pVEC: How Does the Hydrophobic N-terminus Contribute?”, Conference: 30th Anniversary

          Symposium of the Protein-Society Location: Baltimore, Sponsor(s): Protein Soc

          Protein Science,  25, S1, 121-122, 2016.

Nouizi, F., Erkol, H., Luk, A., et al., “Real-Time Photo-Magnetic İmaging”, Biomedical Optics

          Express, 7, 10, 3899-+, 2016.

Özaltın, T., Furuncuoğlu, K., Berkehan, Çatak, Ş., et al., “Effect of Lewis acids on the

          Stereoregularity of N,N-dimethyl acrylamide: A computational Approach”, European 

          Polymer Journal, 83, 67-76, 2016.

Dikici, E., Saraçlar, M., “Semi-Supervised And Unsupervised Discriminative Language Model

          Training For Automatic Speech Recognition”, Speech Communıcation,  83, 54-63, 2016.

Pamuk, U., Karakuzu, A., Öztürk, C., et al., “Combined Magnetic Resonance and Diffusion Tensor

          İmaging Analyses Provide aPowerful Tool for in Vivo Assessment of Deformation Along

          Human Muscle Fibers”, Journal of The Mechanical Behavior of Biomedical Materials, 63, 

          207-219, 2016.

Çınar, S.A., Güven, M.N., Eren, T.N., et al., “Structure-Reactivity Relationships of Novel Monomeric

          Photoinitiators”, Journal of Photochemistry and Photobıology A-Chemistry,  329, 77-87,

          2016.

Johannesen, K., Marini, C., Pfeffer, S., et al., “Phenotypic Spectrum of GABRA1: From Generalized

          Epilepsies to Severe Epileptic Encephalopathies”, Neurology,  87, 11, 1140-1151, 2016.

Yasa, S., Sahillioğlu, A.C., Özören, N., “The ASC Speck as Novel Antigen Carrier Conference: 41st

          FEBS Congress on Molecular and Systems Biology for a Better Life Location”,  Kuşadası,

          Turkey, Date: SEP 03-08, 2016, Sponsor(s): Febs Journal, 283, SI, 1, 112-112,  Meeting

          Abstract, 2016.

Acuner-Özbabacan, S.E., Sümbül, F., Torun, H., et al., “Mutation İnduced Allosteric Regulation of

          Rac1-PAK1 Binding Affinity İnvestigated Via Molecular Simulations and AFM”,

          Conference: 41st FEBS Congress on Molecular and Systems Biology for a Better

          Life Location: Kusadasi, TURKEY, Sponsor(s): Febs Journal, 283, SI, 1, 113-113, Meeting

          Abstract, 2016.

Yıldız, N., Ayhan, M.C., Emre, N.C.T., “Investigating The Role of İnterferon Regulatory Factor 4 in

          Melanoma Cell Lines”, Conference: 41st FEBS Congress on Molecular and Systems Biology

          for a Better Life Location: Kusadasi, Turkey, Sponsor(s):, Febs Journal,  283, SI, 1,

          255-255, Meeting Abstract, 2016.

Sobhiafshar, U., Yılmaz, E., Emre, N.C.T., “Identification and Analysis of İnterferon Regulatory

          Factor 4 Target Genes in Melanoma Via High-Throughput Sequencing of

          İmmunoprecipitated Chromatin”, Conference: 41st FEBS Congress on Molecular and

          Systems Biology for a Better Life Location: Kuşadası, Turkey,  Sponsor(s):Febs Journal, 283,

          SI, 1, 258-258,   Meeting Abstract, 2016.

Yıldız, F., Gülsoy, M., Çilesiz, I., “5 An Experimental Study on Photothermal Damage to Tissue: The

          Role of İrradiance and Wavelength”, Laser Physics,  26, 9, 2016.

Özmen-Okur, Ö., Öztürk, C.,  “Effects of Unmodulation and Thresholding by Average-Based

          Masking on Voxel-Based Morphometry”, Journal of Medıcal Imagıng and Health

          Informatics, 6, 5, 1178-1185, 2016.

Dündar, G., Horta, N., Fernandez, F.V., “Introduction to the Special Issue on SMACD 2015”,

          Integration-The Vlsi Journal, 55, SI, 293-294, 2016.

Afacan, E., Berkol, G., Dündar, G., et al., “A Lifetime-Aware Analog Circuit Sizing Tool”,

          Integration-The Vlsi Journal, 55, SI, 349-356, 2016.

Pak, M., Fernandez, F.V., Dündar, G., “Comparison of QMC-Based Yield-Aware Pareto Front

          Techniques for Multi-Objective Robust Analog Synthesis”, Integratıon-The Vlsı Journal,  55,

          SI, 357-365, 2016.

Sağlamdemir, M.O., Berkol, G., Dündar, G., et al., “An Analog Behavioral Equivalence Boundary

          Search Methodology for Simulink Models and Circuit Level Designs Utilizing Evolutionary

          Computation”, Integratıon-The Vlsı Journal, 55, SI, 366-375, 2016.

Kürkçüoğlu, Z., Bahar, I., Doruker, P.,  “ClustENM: ENM-Based Sampling of Essential

          Conformational Space at Full Atomic Resolution”, Journal of Chemical Theory and

          Computation, 12, 9, 4549-4562, 2016.

Çetinkaya-Fisgin, A., Joo, M.G., Ping, X., et al., “Identification of Fluocinolone Acetonide to Prevent

          Paclitaxel-İnduced Peripheral Neuropathy”, Journal of the Perıpheral Nervous System,  21,

          3, 128-133, 2016.

Akçay, H., Durmuş, H., Deymeer, F., et al., “Charcot-Marıe-Tooth Disease in Turkey: Clinical and

          Genetic Findings from a Single-Centre Experience”, Conference: Inflammatory Neuropathy

          Consortium and GBS 100 Centenary Symposium and Ceilidh Location: Univ Glasgow,

          Glasgow, SCOTLAND Date: JUN 21-24, 2016, Sponsor(s): Baxalta; CSL Behring; Grifols;

          Kedrion S p A; GBS CIDP Fdn Int; Guillain Barre Associated Inflammatory Neuropathies;

          LFB Biomedicaments; Octapharma; Teva Journal of the Peripheral Nervous System, 21, 3,

          230-231, 2016.

Battaloğlu, E., Estrada-Cuzcano, A., Atkinson, D., et al., “Spg11 Is an Overlappıng Gene Between

          Charcot-Marie-Tooth Disease and Hereditary Spastic Paraplegia”,Conference: Inflammatory

          Neuropathy Consortium and GBS 100 Centenary Symposium and Ceilidh Location: Univ

          Glasgow, Glasgow, SCOTLAND Date: JUN 21-24, 2016, Sponsor(s): Baxalta; CSL Behring;

          Grifols; Kedrion S p A; GBS CIDP Fdn Int; Guillain Barre Associated Inflammatory

          Neuropathies; LFB Biomedicaments; Octapharma; Teva Journal of the Perıpheral Nervous

          System, 21, 3, 238-239, 2016.

Candayan, A., Sıvacı, M., Parman, Y., et al., “Mitofusin 2 Gene Mutations in a Turkish Charcot

          Marie-Tooth Disease Cohort”, Conference: Inflammatory Neuropathy Consortium and GBS

          100 Centenary Symposium and Ceilidh Location: Univ Glasgow, Glasgows, 

          SCOTLAND Date: JUN 21-24, 2016, Sponsor(s): Baxalta; CSL Behring; Grifols; Kedrion S p A;

          GBS CIDP Fdn Int; Guillain Barre Associated Inflammatory Neuropathies; LFB

          Biomedicaments; Octapharma; Teva Journal of the Peripheral Nervous System, 21, 3,

          242-242, 2016.

Erol, A.M., Kılıç, A.K., Çelik, A., et al., ”Brait-Fahn-Schwarz Disease: Parkinson's Disease and

          Amyotrophic Lateral Sclerosis Complex”, Acta Neurologica Belgica, 116, 3, 401-403, 2016.

Mavioğlu, R.N., Duman, E.A., “Changes in HPA-Axis Reactivity By Subjective Well-Being: Impact of

          Loneliness, Gender and Serotonin Transporter Genotype”, Conference: 46th Annual

          Conference of the International-Society-of-Psychoneuroendocrinology - Personalized

          Medicine in the Neurosciences - Genetics, Imaging, and Hormones Location: Miami,

          FL Date: SEP 08-11, 2016, Sponsor(s): Int Soc Psychoneuroendocrinol

          Psychoneuroendocrinology, 71, S, 17-18, 2016.

Ergin, K.C., Dedeoğlu, G., Duman, E.A., Interaction Between Childhood Maltreatment, Trait

          Anxiety and Serotonin Transporter Genotype on Cortisol Awakening Response”,

          Conference: 46th Annual Conference of the International-Society-of-

          Psychoneuroendocrinology - Personalized Medicine in the Neurosciences - Genetics,

          Imaging, and Hormones Location: Miami, FL Date: SEP 08-11, 2016, Sponsor(s): Int Soc

          Psychoneuroendocrinol Psychoneuroendocrınology, 71, S, 30-31, 2016.

Adıyan, U., Çivitçi, F., Ferhanoğlu, O., et al., “A Prism-Based Optical Readout Method for MEMS

          Bimaterial Infrared Sensors”, IEEE Photonics Technology Letters, 28, 17, 1866-1869, 2016.

Turan, H.T., Eken, Y., Marazzi, M., et al., “Assessing One- and Two-Photon Optical Properties of

          Boron Containing Arenes”, journal of physical chemistry, 120, 32, 17916-17926, 2016.

Öz, Y., Arslan, M., Gevrek, T.N., et al., “Modular Fabrication of Polymer Brush Coated Magnetic

          Nanoparticles: Engineering the Interface for Targeted Cellular Imaging”, ACS Applied

          Materials & Interfaces, 8, 30, 19813-19826, 2016.

Mignot, Cyril; von Stuelpnagel, Celina; Nava, Caroline; et al., “Genetic and Neurodevelopmental

          Spectrum of SYNGAP1-Associated Intellectual Disability and Epilepsy”, Group

          Author(s): Euro Epinomics-Res Mae Working Grp, Journal of Medical Genetics, 53, 8,

          511-522, 2016.

Yavuz, B., Pehlivan, S., B., Bolu, B.S., et al., “Dexamethasone - PAMAM Dendrimer Conjugates for

          Retinal Delivery: Preparation, Characterization and in Vivo Evaluation”, Journal of

          Pharmacy and Pharmacology, 68 , 8, 1010-1020, 2016.

Kwong, T.C., Hsing, M., Lin, Y., et al., “Differentiation of Tumor Vasculature Heterogeneity Levels

          in Small Animals Based on Total Hemoglobin Concentration Using Magnetic Resonance

          Guided Diffuse Optical Tomography in Vivo”, Applied Optics, 55, 21, 5479-5487, 2016.

Özgür, C., Doruker, P., Akten, E.D., “Investigation of Allosteric Coupling in Human Beta(2)-

          Drenergic Receptor in The Presence of İntracellular Loop 3”, BMC Structural Biology, 16, 9,

          2016.

Afacan, E., Berkol, G., Dündar, G., et al., “An Analog Circuit Synthesis Tool Based on Efficient and

          Reliable Yield Estimation”, Microelectronics Journal, 54, 14-22, 2016.

Eren, T.N., Yaşar, N., Aviyente, V., et al., “Photophysical and Photochemical Studies of Novel

          Thioxanthone-Functionalized Methacrylates through LED Excitation”, Macromolecular

          Chemistry and Physics, 217, 13, 1501-1512, 2016.

Usluer, S., Salar, S., Arslan, M., et al., “SCN1A Gene Sequencing in 46 Turkish Epilepsy Patients

          Disclosed 12 Novel Mutations”, Seizure-European Journal of Epilepsy, 39, 34-43, 2016.

Duru, I., Ege, D., Kamali, A.R., “Graphene Oxides For Removal of Heavy and Precious Metals From

          Wastewater”, Journal of Materials Science, 51,13, 6097-6116, 2016.

Kürkçüoğlu, Z., Doruker, P., “Ligand Docking to Intermediate and Close-To-Bound Conformers

          Generated by an Elastic Network Model Based Algorithm for Highly Flexible Proteins”, Plos

          One, 11, 6, 2016.

Bilgin, R.,  Ebeoğlu, N., Inak, S., et al., “DNA Barcoding of Birds at a Migratory Hotspot in Eastern

          Turkey Highlights Continental Phylogeographic Relationships”, Plos One, 11, 6, 2016.

Bilgin, Habib; Zahertar, Shahrzad; Sadeghzadeh, Seyedehayda; et al., “A MEMS-Based Terahertz

          Detector With Metamaterial-Based Absorber and Optical İnterferometric Readout”,

          Conference: EUROSENSORS Conference Location: Freiberg, GERMANY Date: SEP 06-09,      

          2015 Sensors and Actuators A-Physical, 244, 292-298, 2016.

Sun, L., Akgün, B., Hu, R., et al., “Scaling Behavior and Segment Concentration Profile of Densely

          Grafted Polymer Brushes Swollen in Vapor”, Langmuır, 32, 22, 5623-5628, 2016.

 

Sevim, S., Shamsudhin, N., Özer, S., et al., “An Atomic Force Microscope with Dual Actuation

          Capability for Biomolecular Experiments”, Scıentific Reports, 6, 2016.

Demirkan, I., Sarp, A., Kabas, S., Gülsoy, M., “Ceramic Bracket Debonding With Tm:Fiber Laser”,

          Journal of Biomedical Optics, 21, 6, 2016.

Kalaoğlu-Altan, Ö.I., Verbraeken, B., Lava, K., et al., “Multireactive Poly(2-oxazoline) Nanofibers

          through Electrospinning with Crosslinking on the Fly”, Acs Macro Letters, 5, 6, 676-681,

          2016.

Tanrıver, G., Dedeoğlu, B., Çatak, Ş., et al., “Computational Studies on Cinchona Alkaloid

          Catalyzed Asymmetric Organic Reactions”, Accounts of Chemical Research, 49, 6, 1250-

          1262, 2016.

Kancheva, D., Atkinson, D., De Rijk, P., et al., “Novel Mutations in Genes Causing Hereditary

          Spastic Paraplegia and Charcot-Marie-Tooth Neuropathy İdentified by an Optimized

          Protocol for Homozygosity Mapping Based on Whole-Exome Sequencing”,

          Genetics in Medicine, 18, 6, 600-607, 2016.

Ateş, F., Temelli, Y., Yücesoy, C.A., “The Mechanics of Activated Semitendinosus Are Not

          Representative of the Pathological Knee Joint Condition of Children with Cerebral Palsy”,

          Journal of Electromyography and Kinesiology, 28, 130-136, 2016.

Bilgin, R., Gürün, K., Rebelo, H., et al., “Circum-Mediterranean Phylogeography of a Bat Coupled

          with Past Environmental Niche Modeling: A New Paradigm for the Recolonization of

          Europe?”, Molecular Phylogenetics and Evolution,  99, 323-336, 2016.

Türkoğlu, A.N., Yücesoy, C.A., “Simulation of Effects of Botulinum Toxin on Muscular Mechanics

          in Time Course of Treatment Based on Adverse Extracellular Matrix Adaptations”, Journal

          of Biomechanics,  49, 7, 1192-1198, 2016.

Bolu, B.S., Gecici- Manavoglu, E., Sanyal, R., “Combretastatin A-4 Conjugated Antiangiogenic

          Micellar Drug Delivery Systems Using Dendron-Polymer Conjugates”, Molecular

          Pharmaceutics, 13, 5, 1482-1490, 2016.

Çevrim, Ç., Mika, K., Callaerts, P.,  et al., “Unzipped Mediates Drosophila Mushroom Body

          Development Through Neuron-Glia İnteractions.”, Conference: 25th Annual Meeting of the

          European-Chemoreception-Research-Organization (ECRO) Location: Bogazici Univ,

          Istanbul, Turkey, Date: SEP 01-05, 2015, Sponsor(s): European Chemorecept Res Org,    

          Chemical Senses, 41, 4, 403-404, 2016.

Ertekin, E., Hatt, J., Konstantinidis, K., Konstantinos, T., et al. “Similar Microbial Consortia and

          Genes Are Involved in the Biodegradation of Benzalkonium Chlorides in Different

          Environments”, Environmental Science & Technology,  50, 8, 4304-4313, 2016.

Wang, W., Xu, Y., Backes, S., et al., “Construction of Compact Polyelectrolyte Multilayers Inspired

          by Marine Mussel: Effects of Salt Concentration and pH As Observed by QCM-D and AFM”,

          Langmuir,  32, 14, 3365-3374, 2016.

Kaga, S., Arslan, M., Sanyal, R., et al.,”Dendrimers and Dendrons as Versatile Building Blocks for

          the Fabrication of Functional Hydrogels”, Molecules, 21, 4, 497, 2016.

Kaga, S., Gevrek, T.N., Sanyal, A., et al., “Synthesis and Functionalization of Dendron-Polymer

          Conjugate Based Hydrogels via Sequential Thiol-Ene "Click" Reactions”, Journal of Polymer

          Science Part A-Polymer Chemistry, 54, 7, 926-934, 2016.

Öztürk, H., Özkırımlı, E., Özgür, A.,A Comparative Study of SMILES-Based Compound Similarity

          Functions for Drug-Target İnteraction Prediction”, Bmc Bioinformatics , 17, 128, 2016.

Akkan, Ç.K., Hür, D., Uzun, L., et al., “Amino Acid Conjugated Self Assembling Molecules for

          Enhancing Surface Wettability of Fiber Laser Treated Titanium Surfaces”, Applied Surface

          Science, 366, 284-291, 2016.

Torun, H., Sadeghzadeh, S., Bilgin, H., et al., “A Micromachined Freestanding Terahertz Absorber

          with an Array of Metallic Patches”, Aip Advances,  6, 3, 2016.

Topaloğlu, N., Güney, M., Aysan, N., et al., “The Role of Reactive Oxygen Species in the

          Antibacterial Photodynamic Treatment: Photoinactivation Vs Proliferation”, Letters in

          Applied Microbiology, 62, 3, 230-236, 2016.

Acuner-Özbabacan, S.E., Sumbul, F., Torun, H., et al., “Allosteric Regulation of Rac1-PAK1 Binding

          Affinity by Mutant Residues through Molecular Simulations and AFM”, Conference: 60th

          Annual Meeting of the Biophysical-Society Location: Los Angeles, CA Date: FEB 27-MAR 02

          2016, Sponsor(s): Biophys Soc, Biophysical Journal, 110, 3, 1, 383A-383A, Meeting

          Abstract: 1891-Pos, 2016.

Çirkinoğlu, H.O., Bilgin, H., Çivitçi, F., et al., “Fiber Temperature Sensor Utilizing a

          Thermomechanical MEMS Detector”, Journal of Lightwave Technology,  34, 3,1025-1030,

          2016.

Güveli, Ş., Çınar, S.A., Karahan, Ö., et al. “Nickel(II)-PPh3 Complexes of S,N-Substituted

          Thiosemicarbazones - Structure, DFT Study, and Catalytic Efficiency”, European Journal of

          Inorganic Chemistry, 4, 538-544, 2016.

Afacan, E., Dündar, G., Pusane, A.E., et al., “Semi-Empirical Aging Model Development Via

          Accelerated Aging Test”, Book Group Author(s): IEEE Conference: 13th International

          Conference on Synthesis, Modeling, Analysis and Simulation Methods and Applications to

          Circuit Design (SMACD) Location: Lisbon, Portugal Date: JUN 27-30, 2016.

Afacan, E., Dündar, G., Pusane, A.E., et al., “Efficient Signature Selection Tool for Sense & React

          Systems”, Book Group Author(s): IEEE Conference: 13th International Conference on

          Synthesis, Modeling, Analysis and Simulation Methods and Applications to Circuit Design

          (SMACD) Location: Lisbon, Portugal Date: JUN 27-30, 2016.

Batur, O.Z., Dündar, G., Koca, M., “MATLAB & VHDL-AMS Co-Simulation Environment for IR-UWB

          Transceiver Design”, Book Group Author(s): IEEE Conference: 13th International

          Conference on Synthesis, Modeling, Analysis and Simulation Methods and Applications to

          Circuit Design (SMACD) Location: Lisbon, PORTUGAL Date: JUN 27-30, 2016.Bottom of Form

Demir, K., Bilgin, H., Şahin, A.B., et al., “Design of a Frequency Reconfigurable, Terahertz Antenna

          for Photomixers”, Book Group Author(s): IEEE Conference: 41st International Conference

          on Infrared, Millimeter, and Terahertz Waves (IRMMW-THz) Location: Copenhagen,

          Denmark Date: SEP 25-30, 2016.  Sponsor(s): DTU; IEEE; QMC Instruments; Danish Ct

          Laser Infrastructure; DTU Fotonik, Dept Photon Engn; ARL; CARLSBERG FDN; AF OFF SCI

          RES; Tech Univ Denmark; IEEE Microwave Theory & Tech Soc; Azpect Photon; Ekspla;

          Hubner HF Syst Engn; I2S; Laser Quantum; Menlo Syst; Neaspec; Springer; TeraView, 

          Virginia Diodes 2016 41st Internatıonal Conference on Infrared, Mıllımeter, and Terahertz

          Waves (Irmmw-Thz)   Book Series: International Conference on Infrared Millimeter and

          Terahertz Waves   Published: 2016

Sari, L., Saraçlar, M., “Score Normalization for Keyword Search”, Book Group Author(s): IEEE

          Conference: 24th Signal Processing and Communication Application Conference

          (SIU) Location: Zonguldak, Turkey Date: MAY 16-19, 2016 Sponsor(s): IEEE; Bulent Ecevit

          Univ, Dept Elect & Elect Engn; Bulent Ecevit Univ, Dept Biomed Engn; Bulent Ecevit Univ,

          Dept Comp Engn., 761-764, 2016.

Gündoğdu, B., Sarı, L., Çetinkaya, G., et al., “Template-Based Keyword Search with Pseudo

          Posteriorgrams”, Book Group Author(s): Sponsor(s): IEEE; Bulent Ecevit Univ, Dept Elect &

          Elect Engn; Bulent Ecevit Univ, Dept Biomed Engn; Bulent Ecevit Univ, Dept Comp Engn

          2016 24th Signal Processing and Communication Application Conference

          (SIU), 973-976, 2016.

Çamlı, B., Kuşakçı, E., Lafçı, B., et al., “A Microwave Ring Resonator Based Glucose Sensor”, Edited

          by: Barsony, I., Zolnai, Z., Battistig, G., Conference: 30th Eurosensors

          Conference Location: Budapest, HUNGARY Date: SEP 04-07, 2016

          Proceedings of the 30th Anniversary Eurosensors Conference - Eurosensors 2016   Book

          Series: Procedia Engineering   Volume: 168   Pages: 465-468   Published: 2016.

Cirkinoğlu, H.O., Bilgin, H., Çivitçi, F., et al., “Fiber Temperature Sensor Utilizing A

          Thermomechanical MEMS Detector”, Edited by: Yin, S; Guo, R., Conference: Conference on

          Photonic Fiber and Crystal Devices - Advances in Materials and Innovations in Device

          Applications X Location: San Diego, CADate: AUG 28-29, 2016. Sponsor(s): Spı 

          Photonıc Fıber and Crystal Devıces: Advances in Materıals and Innovatıons in Devıce

          Applications X,  Book Series: Proceedings of SPIE,  9958, 2016.

Altındağ, E., Usluer, S., Gündoğdu, A., et al., “Late-Onset Myoclonic Epilepsy in Down Syndrome:

          Investigation of EPM1 Gene Mutations in two Cases”, Journal of Neurological Sciences

          Turkish, 33, 1, 132-137, 2016.

Cagavi, E.,  Özören, N., “Editorial "Stem Cells: Biology, Genetics, and Epigenetics", Turkish Journal

          of Biology, 40, 5, I-II, 2016.

Gökbulut, B., Inci, M.N., “An Interferometric Vibration Sensor Based on a Four-core Optical

          Fiber”, Edited by: Berghmans, F., Mignani, A.G., Conference: Conference on Optical Sensing

          and Detection IV Location: Brussels, Belgium Date: APR 03-07, 2016, Sponsor(s): SPIE;

          Brussels Photon Team; Res Fdn Flanders; Visit Brussels Optical Sensing and Detection

          IV, Book Series: Proceedings of SPIE, 9899, Article Number: UNSP 989920-1, 2016.

Vardar, Y., Güçlü, B., Başdoğan, Ç., “Effect of Waveform in Haptic Perception of Electrovibration

          on Touchscreens”, Edited by: Bello, F., Kajimoto, H., Visell, Y., Conference: 10th International

          Conference on Haptics - Perception, Devices, Control, and Applications

          (EuroHaptics) Location: Imperial Coll London, London, England Date: JUL 04-07, 2016

          Sponsor(s): CEA; EPSRC UK RAS Network; Force Dimens; Lofelt; Moog; Shadow Robot;

          Valeo; Gener Robot; Haption; Optoforce Ltd; Prototouch; Actronika; Disney Res; IET Robot

          & Mechatron TPN; Springer; Ocado Technol; Right Hand Robot; Tactile Labs Inc; Tanvas

          Haptics: Perception, Devices, Control and Applications, Eurohaptics 2016, PT I   Book

          Series: Lecture Notes in Computer Science, 9774, 190-203, 2016.

Alma, U.A., Ilkhani, G., Samur, E., “On Generation of Active Feedback with Electrostatic

          Attraction”, Edited by: Bello, F., Kajimoto, H., Visell, Y., Conference: 10th International

          Conference on Haptics - Perception, Devices, Control, and Applications

          (EuroHaptics) Location: Imperial Coll London, London, England Date: JUL 04-07, 2016,

          Sponsor(s): CEA; EPSRC UK RAS Network; Force Dimens; Lofelt; Moog; Shadow Robot;

          Valeo; Gener Robot; Haption; Optoforce Ltd; Prototouch; Actronika; Disney Res; IET Robot

          & Mechatron TPN; Springer; Ocado Technol; Right Hand Robot; Tactile Labs Inc; Tanvas

          Haptics: Perception, Devices, Control and Applications, Eurohaptıcs 2016, PT II   Book

          Series: Lecture Notes in Computer Science, 9775, 449-458, 2016.

Afacan, E., Dündar, G., “A Mixed Domain Sizing Approach for RF Circuit Synthesis”, Edited

          by: Brenkus, J., Stopjakova, V., Conference: IEEE 19th International Symposium on Design

          and Diagnostics of Electronic Circuits & Systems (DDECS) Location: Kosice,

          Slovakia Date: APR 20-22, 2016,  Sponsor(s): IEEE Council Elect Design Automat; IEEE

          Comp Soc; Slovak Univ. Technol, Fac Elect Engn & Informat Technol; Slovak Univ Technol,

          Fac Informat & Informat Technologies; Slovak Acad Sci, Inst Informat 2016 IEEE 19th

          International Symposium on Design and Diagnostics of Electronic Circuits & Systems

          (DDECS)   Book Series: IEEE International Symposium on Design and Diagnostics of

          Electronic Circuits & Systems, 80-83, 2016.

Sevim, S., Özer, S., Feng, L., et al., “Dually Actuated Atomic Force Microscope with Miniaturized

          Magnetic Bead-Actuators for Single-Molecule Force Measurements”, Nanoscale Horizons, 1,

          6, 488-495, 2016.

Alaybeyoğlu, B., Akbulut, B.S., Özkırımlı, E., “Insights into Membrane Translocation of the Cell

          Penetrating Peptide Pvec From Molecular Dynamics Calculations”, Journal of Biomolecular

          Structure & Dynamics, 34, 11, 2387-2398, 2016.

Kösoğlu, G., Yüksel, H., İnci, M.N., “3D Phase Stepping Optical Profilometry Using a Fiber Optic

          Lloyd's Mirror”, Edited by: Schelkens, P., Ebrahimi, T., Cristobal, G., et al.,

          Conference: Conference on Optics, Photonics and Digital Technologies for Imaging

          Applications IV Location: Brussels, Belgium Date: APR 05-06, 2016, Sponsor(s): SPIE;

          Brussels Photon Team; Res Fdn Flanders; Visit Brussels, Optics, Photonics and Digital

          Technologies for Imaging Applications IV   Book Series: Proceedings of SPIE, 9896, 2016.

Işeri, E., Ülgen, K.O., Yılmaz, Ç., et al., “Fabrication of Steel Displacement Amplifiers Integrated to

          Microfluidic Channels”, Book Group Author(s): IEEE Conference: 29th IEEE International

          Conference on Micro Electro Mechanical Systems (MEMS) Location: Shanghai, PEOPLES R

          CHINA Date: JAN 24-28, 2016, Sponsor(s): IEEE; IEEE Robot & Automat Soc

          2016 IEEE 29th International Conference on Micro Electro Mechanical Systems (MEMS), 

          Book Series: Proceedings IEEE Micro Electro Mechanical Systems, 493-496, 2016.

Altınbaşak, I., Sanyal, R., Sanyal, A., “Best of Both Worlds: Diels-Alder Chemistry Towards

          Fabrication of Redox-Responsive Degradable Hydrogels for Protein Release”, RSC

          Advances, 6, 78, 74757-74764, 2016.

Alagha, H.Z., Gülsoy, M., “Photothermal Ablation of Liver Tissue with 1940-Nm Thulium Fiber

          Laser: An Ex Vivo Study on Lamb Liver”, Journal of Biomedical Optics, 21, 1, 2016.

Uğur, G., Akgün, B., Jiang, Z., et al., “Effect of Tethering on The Surface Dynamics of a Thin

          Polymer Melt Layer”, Soft Matter, 12, 24, 5372-5377, 2016.

Erkol, H., Nouizi, F., Luk, A.T., et al. “A New Analytical Approach for Heat Generation in Tissue

          Due to Laser Excitation (Conference Presentation)”, Edited by: Jansen, ED

          Conference: Conference on Optical Interactions with Tissue and Cells XXVII Location: San

          Francisco, CA Date: FEB 14-17, 2016, Sponsor(s): SPIE, Optical Interactions with Tissue

          and Cells XXVII   Book Series: Proceedings of SPIE, 9706, 2016.

Kaya, Ö., Gülsoy, M., “A Non-Contact Temperature Measurement System for Controlling

          Photothermal Medical Laser Treatments”, Edited by: Jansen, E.D., Conference: Conference  

          on Optical Interactions with Tissue and Cells XXVII Location: San Francisco, CA Date: FEB

          14-17, 2016, Sponsor(s): SPIE Optical Interactions With Tissue and  Cells XXVII   Book

          Series: Proceedings of SPIE, 9706, 2016.

Ruhi, M.K., Ak, A., Gülsoy, M., “Efficiency of Photodynamic Therapy Using İndocyanine Green and

          İnfrared Light on MCF-7 Breast Cancer Cells in Vitro”, Edited by: Kessel, D.H., Hasan, T.,

          Conference: Conference on Optical Methods for Tumor Treatment and Detection -  

          Mechanisms and Techniques in Photodynamic Therapy XXV Location: San Francisco,  

          CA Date: FEB 13-14, 2016, Sponsor(s): SPIE, Optical Methods for Tumor Treatment and

          Detection: Mechanisms and Technıques in Photodynamic Therapy XXV,  Book

          Series: Proceedings of SPIE, 9694, 2016.

Eribol, P., Uğuz, A.K., Ülgen, K.O., “Screening Applications in Drug Discovery Based on

          Microfluidic Technology”, Biomicrofluidics,  10, 1, 2016.

Sarp, A.S., Gülsoy, M., “Comparing Irradiation Parameters on Disinfecting Enterrecoccus Faecalis

          in Root Canal Disinfection”, Edited by: Rechmann, P., Fried, D., Conference: Conference on  

          Lasers in Dentistry XXII Location: San Francisco, CA Date: FEB 14, 2016, Sponsor(s): SPIE

          Lasers in Dentistry XXII   Book Series: Proceedings of SPIE, 9692, 2016.

Akcan, S., “Novice Non-Native English Teachers' Reflections on Their Teacher Education

         Programmes and Their First Years of Teaching”, Profıle-Issues in Teachers Professional

         Development, 18, 1, 55-70, 2016.

Yıldırım, A., Türkaydın, M., Garipcan, B., et al., “Cytotoxicity of Multifunctional Surfactant

          Containing Capped Mesoporous Silica Nanoparticles”,RSC

          Advances, 6, 38, 32060-32069, 2016.

Deniz, U., Özkırımlı, E., Ülgen, K.O., “A Systematic Methodology for Large Scale Compound

          Screening: A Case Study on the Discovery of Novel S1PL İnhibitors”, Journal of Molecular  

          Graphics & Modelling, 63, 110-124, 2016.

Kömürcü, G. Pusane, A.E., Dündar, G., “Effects of Aging and Compensation Mechanisms in

          Ordering Based RO-PUFs”, Integration-The Visi Journa, 52, 71-76, 2016.