2014 Yılı Yayınları

1.            Potier, D; Davie, K; Hulselmans, G; Sanchez, MN; Haagen, L ; Huynh-Thu, VA; Koldere, D; Celik, A; Geurts, P; Christiaens, V; Aerts 2014 “Mapping Gene Regulatory Networks in Drosophila Eye Development by Large-Scale Transcriptome Perturbations and Motif Inference” SCELL REPORTS 9, 2290-2303.

2.            Kart, T; Kosoglu, G; Yuksel, H; Inci, MN. 2014” Fourier transform optical profilometry using fiber optic Lloyd's mirrors” APPLIED OPTICS  53, 8175-8181

3.            Lumbroso, A; Catak, S; Sulzer-Mosse, S; De Mesmaeker, A 2014” Synthesis of cyclobuteniminium salts derived from aldo-keteniminium salts and study of their reactivity in Diels-Alder reaction” TETRAHEDRON LETTERS  55, 6721-6725  

4.            Sahillioglu, Ali Can; Sumbul, Fidan; Ozoren, Nesrin; Haliloglu, T 2014 “Structural and Dynamics Aspects of ASC Speck Assembly” STRUCTURE  22

5.            Gofman, Yana; Schaerfe, Charlotta; Marks, Debora S.; Haliloglu, T ; Ben-Tal, N 2014 “Structure, Dynamics and Implied Gating Mechanism of a Human Cyclic Nucleotide-Gated Channel” PLOS COMPUTATIONAL BIOLOGY  10

6.           Karagoz, C. Serkan; Bozma, H. Isil; Koditschek, Daniel E 2014 “Coordinated Navigation of Multiple Independent Disk-Shaped Robots” IEEE TRANSACTIONS ON ROBOTICS   30, 1289-1304

7.            Gevrek, Tugce Nihal; Bilgic, Tugba; Klok, Harm-Anton; Sanyal, A. 2014 “Maleimide-Functionalized Thiol Reactive Copolymer Brushes: Fabrication and Post-Polymerization Modification” MACROMOLECULES  4

8.            Alkan, C; Kavak, P; Somel, M; Gokcumen, O; Ugurlu, S; Saygi, C ; Dal, E; Bugra, K; Gungor, T; Sahinalp, SC; Ozoren, N; Bekpen, C 2014 “Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa” 8 BMC GENOMICS  15

9.            Arslan, M  ; Gok, O; Sanyal, R; Sanyal, A. 2014 “Clickable Poly(ethylene glycol)-Based Copolymers Using Azide-Alkyne Click Cycloaddition-Mediated Step-Growth Polymerization” MACROMOLECULAR CHEMISTRY AND PHYSICS  215, 2237-2247  

10.          Gunduz, A; Eken, AG; Bilgic, B; Hanagasi, HA; Bilguvar, K; Gunel, M; Basak, AN; Ertan, S 2014 “FBX07-R498X mutation: Phenotypic variability from chorea to early onset parkinsonism within a family” PARKINSONISM & RELATED DISORDERS  20, 1253-1256

11.          Mutluturk, A; Boduroglu, A. 2104 “Effects of spatial configurations on the resolution of spatial working memory”  ATTENTION PERCEPTION & PSYCHOPHYSICS  76, 2276-2285  

12.          Park, EJ ; Gevrek, TN ; Sanyal, R ; Sanyal, A  2014 “Indispensable Platforms for Bioimmobilization: Maleimide-Based Thiol Reactive Hydrogels”  BIOCONJUGATE CHEMISTRY  25, 2004-2011  

13.          Karaoguz, H; Erkent, O; Bozma, H. I. 2104 “RGB-D based place representation in topological maps” MACHINE VISION AND APPLICATIONS  25, 1913-1927  

14.          Pena-Francesch,; Akgun, B; Miserez, A; Zhu, WP; Gao, HJ; Demirel, MC 2014 “Pressure Sensitive Adhesion of an Elastomeric Protein Complex Extracted From Squid Ring Teeth” ADVANCED FUNCTIONAL MATERIALS  24, 6227-6233  

15.          Dedeoglu,; Monari, A; Etienne, T ; Aviyente, V ; Ozen, AS 2014 “Detection of Nitroaromatic Explosives Based on Fluorescence Quenching of Silafluorene- and Silole-Containing Polymers: A Time-Dependent Density Functional Theory Study” JOURNAL OF PHYSICAL CHEMISTRY C  118, 23946-23953

16.          Cicek, I; Pusane, A. E.; Dundar, G 2014 “A new dual entropy core true random number generator” ANALOG INTEGRATED CIRCUITS AND SIGNAL PROCESSING  81, 61-70   

17.          Tumer, M; Sarioglu, B; Mutlu, S ; Ulgen, Y ; Yalcinkaya, A; Ozturk, C 2014 “Using a low-amplitude RF pulse at echo time (LARFET) for device localization in MRI” MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING  52, 885-894

18.          Torun, H ; Top, FC ; Dundar, G ; Yalcinkaya, AD 2014 “An antenna-coupled split-ring resonator for biosensing” OF APPLIED PHYSICS  116

19.          Yamamoto, S ; Jaiswal, M ; Charng, WL; Gambin, T; Karaca, E ; Mirzaa, G; Wiszniewski, W; Sandoval, H; Haelterman, NA; Xiong, B; Zhang, K; Bayat, V; David, G ; Li, TC; Chen, KC ; Gala, U ; Harel, T ; Pehlivan, D;  Penney, S ; Vissers, LELM; de Ligt, J; Jhangiani, SN; Xie, YJ; Tsang, SH; Parman, Y ; Sivaci, M; Battaloglu, E; Muzny, D; Wan, YW; Liu, ZD; Lin-Moore, AT  ; Clark, RD  ; Curry, CJ; Link, N; Schulze, KL; Boerwinkle, E; Dobyns, WB; Allikmets, R; Gibbs, ; Chen, R; Lupski, JR ; Wangler, MF; Bellen, HJ 2014 “A Drosophila Genetic Resource of Mutants to Study Mechanisms Underlying Human Genetic Diseases” CELL  159, 200-214  

20.          Lumbroso, A.; Catak, S; Sulzer-Mosse, S; De Mesmaeker, A 2014 “Cycloaddition of keteniminium with terminal alkynes toward cyclobuteniminium and their use in Diels-Alder reactions” TETRAHEDRON LETTERS  55, 5147-5150  

21.          Ates, F; Temelli, Y; Yucesoy, Can A 2014 “Intraoperative experiments show relevance of inter-antagonistic mechanical interaction for spastic muscle's contribution to joint movement disorder” CLINICAL BIOMECHANICS  29, 943-949  

22.          Erkol, H.; Unlu, M. B 2014 “Spectral power density of the random excitation for the photoacoustic wave equation” AIP ADVANCES  4

23.          Zaleska, A ; Eiwegger, T; Soyer, O; van de Veen, W; Rhyner, C; Soyka, MB  ; Bekpen, C  ; Demiroz, D ; Treis, A; Sollner, S ; Palomares, O; Kwok, WW; Rose, H; Senti, G; Kundig, TM; Ozoren, N ; Jutel, M; Akdis, CA; Crameri, R; Akdis, M 2014 “Immune regulation by intralymphatic immunotherapy with modular allergen translocation MAT vaccine” ALLERGY 69, 1162-1170  

24.          Saraclar, M; Chelba, C; Ramabhadran, B 2014 “Editorial for the special issue on spoken content retrieval” COMPUTER SPEECH AND LANGUAGE  28, 1019-1020  

25.          Erarslan, Refik Burak; Adiyan, Ulas; Lulec, Sevil Zeynep;Torun,H 2014 “Design and characterization of micromachined sensor array integrated with CMOS based optical readout”  SENSORS AND ACTUATORS A-PHYSICAL  125, 44-50  

26.          Arslan, Mehmet; Gevrek, Tugce Nihal; Lyskawa, Joel; Sanyal, A; Sanyal, R 2014 “Bioinspired Anchorable Thiol-Reactive Polymers: Synthesis and Applications Toward Surface Functionalization of Magnetic Nanoparticles” MACROMOLECULES  47, 5124-5134  

27.          Arslan,; Gevrek, TN; Lyskawa, J ; Szunerits, S; Boukherroub, R; Sanyal, R; Woisel, P; Sanyal, A 2014 “Analytical reconstruction of the bioluminescent source with priors” OPTICS EXPRESS  22

28.          Jeong, Y; Chen, YC; Turksoy, MK; Rana, S; Tonga, GY; Creran, B; Sanyal, A; Crosby, AJ; Rotello, VM 2014 “Tunable Elastic Modulus of Nanoparticle Monolayer Films by Host-Guest Chemistry” ADVANCED MATERIALS  26, 5056-5061  

29.          Erkol, H; Aytac-Kipergil, E; Unlu, Mehmet B 2014 “Photoacoustic radiation force on a microbubble” PHYSICAL REVIEW E  90

30.          Yuce, B; Ugurdag, H. F.; Goren, S; Dundar, G 2014 “Fast and Efficient Circuit Topologies for Finding the Maximum of n k-Bit Numbers” IEEE TRANSACTIONS ON COMPUTERS   63, 1868-1881  

31.          Lahut, S; Vadasz, D; Depboylu, C; Ries, V; Krenzer, M ; Stiasny-Kolster, K; Basak, AN; Oertel, WH; Auburger, G 2014 “The PD-associated alpha-synuclein promoter Rep1 allele 2 shows diminished frequency in restless legs syndrome” NEUROGENETICS 15, 189-192  

32.          Guney, M.; Tunc, B.; Gulsoy, M 2014 “Investigating the ablation efficiency of a 1940-nm thulium fibre laser for intraoral surgery”  INTERNATIONAL JOURNAL OF ORAL AND MAXILLOFACIAL SURGERY  43, 1015-1021  

33.          Misiti, Teresa M.; Tezel, Ulas; Pavlostathis, Spyros G 2014 “Effect of Alkyl Side Chain Location and Cyclicity on the Aerobic Biotransformation of Naphthenic Acids” ENVIRONMENTAL SCIENCE & TECHNOLOGY  48, 7909-7917  

34.          Kokciyan, N ; Turkay, R; Uskudarli, S; Yolum, P; Bakir, B; Acar, B 2014 “Semantic Description of Liver CT Images: An Ontological Approach” IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS 18, 1363-1369  

35.          Uyar, A; Kantarci-Carsibasi, N; Haliloglu, T; Doruker, P 2014 “Features of Large Hinge-Bending Conformational Transitions. Prediction of Closed Structure from Open State” BIOPHYSICAL JOURNAL  106, : 2656-2666  

36.          Stapleford, KA; Coffey, LL; Lay, S; Borderia, AV; Duong, V ; Isakov, O; Rozen-Gagnon, K ; Arias-Goeta, C ; Blanc, H; Beaucourt, S; Haliloglu, T; Schmitt, C; Bonne, I; Ben-Tal, N; Shomron, N ; Failloux, AB; Buchy, P; Vignuzzi, M 2014 “Emergence and Transmission of Arbovirus Evolutionary Intermediates with Epidemic Potential” CELL HOST & MICROBE  15, 706-716  

37.          Unay, D; Ozturk, C; Stone, M 2014 “Single syllable tongue motion analysis using tagged cine MRI” COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING  17, 853-864  

38.          Oteyza, AC ; Battaloglu, E; Ocek, L ; Lindig, T ; Reichbauer, J; Rebelo, AP; Gonzalez, MA; Zorlu, Y; Ozes, B; Timmann, D; Bender, B ; Woehlke, G ; Zuchner, S; Schols, L; Schule, R 2014 “Motor protein mutations cause a new form of hereditary spastic paraplegia” NEUROLOGY 82, 2007-2016  

39.          Schwartz, Aliza J.; Boduroglu, Aysecan; Gutchess, Angela H 2014 “Cross-Cultural Differences in Categorical Memory Errors” COGNITIVE SCIENCE  38, 997-1007  


41.          Turkoglu, Ahu N.; Huijing, Peter A.; Yucesoy, Can A 2014 “Mechanical principles of effects of botulinum toxin on muscle length-force characteristics: An assessment by finite element modeling” JOURNAL OF BIOMECHANICS  47, 1565-1571  

42.          Puliafito,; Torres, L; Ozatay, O; Hauet, T; Azzerboni, B; Finocchio, G 2014 “Micromagnetic analysis of dynamical bubble-like solitons based on the time domain evolution of the topological density” JOURNAL OF APPLIED PHYSICS  115

43.          Okamoto, Y ; Goksungur, MT ; Pehlivan, D; Beck, CR; Gonzaga-Jauregui, C; Muzny, DM; Atik, MM; Carvalho, CMB; Matur, Z; Bayraktar, S; Boone, PM; Akyuz, K; Gibbs, RA; Battaloglu, E; Parman, Y; Lupski, JR 2014 “Exonic duplication CNV of NDRG1 associated with autosomal-recessive HMSN-Lom/CMT4D” GENETICS IN MEDICINE  16, 386-394  

44.          Ziylan, A; Dogan, S; Agopcan, S; Kidak, R; Aviyente, V; Ince, NH 2014 “Sonochemical degradation of diclofenac: byproduct assessment, reaction mechanisms and environmental considerations” ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH  21, 5929-5939

45.          Huijing, P A; van der Kamp, J; Yucesoy, CA2014 “The Media for Haptic Perception and for Force Transmission in Movement Are the Same of Course” JOURNAL OF MOTOR BEHAVIOR  46, 189-190  

46.          Villedieu-Percheron, E; Catak, S; Zurwerra, D; Staiger, R; Lachia, M; De Mesmaeker, A 2014 “6 pi-10 pi-Electrocyclization of ketene-iminium salts for the synthesis of substituted naphthylamines” TETRAHEDRON LETTERS  55, 2446-2449  

47.          Boduroglu, A; Tekcan, AI; Kapucu, A 2014 “The relationship between executive functions, episodic feeling-of-knowing and confidence judgements” JOURNAL OF COGNITIVE PSYCHOLOGY  26, 333-345  


49.          Senturk, N; Yeniceri, N; Alp, IE; Altan-Atalay, A 2014 “An Exploratory Study on the Junior Brixton Spatial Rule Attainment Test in 6-to 8-Year-Olds” JOURNAL OF PSYCHOEDUCATIONAL ASSESSMENT   32, 123-132  

50.          Isci, S; Dogan, H; Ozturk, C; Otu, HH 2014 “Bayesian network prior: network analysis of biological data using external knowledge” BIOINFORMATICS 30, 860-867  

51.          Guler, U; Dundar, G 2014 “Modeling CMOS Ring Oscillator Performance as a Randomness Source” IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS I-REGULAR PAPERS  61,712-724

52.          Bilgici, ZS; Buyukgumus, O; Altin, Ayse; Avcı, D 2014 “Synthesis and polymerizations of novel bisphosphonate-containing methacrylates derived from alkyl alpha-hydroxymethacrylates” POLYMER INTERNATIONAL  63, 427-434  

53.          Yaman, B.; Terkesli, I.; Turksoy, K. M.; Sanyal, A; Mutlu,S 2014 “Fabrication of a planar water gated organic field effect transistor using a hydrophilic polythiophene for improved digital inverter performance” ORGANIC ELECTRONICS  15, 646-653  

54.          Acikgoz, Ulusu, Y ; Akin, S; Sonmezoglu, S ; Gokce, I; Inci, MN  2014 “Photoinduced electron transfer mechanism between green fluorescent protein molecules and metal oxide nanoparticles” CERAMICS INTERNATIONAL  40, 2943-2951  

55.          Altin, A; Akgun, B; Bilgici, ZS; Turker, SB; Avci, D 2014 “Synthesis, Photopolymerization, and Adhesive Properties of Hydrolytically Stable Phosphonic Acid-Containing (Meth)acrylamides”  JOURNAL OF POLYMER SCIENCE PART A-POLYMER CHEMISTRY 52, 511-522  

56.          Yucel, EB.; Eraslan, S; Ulgen, KO 2014 “The impact of medium acidity on the chronological life span of Saccharomyces cerevisiae - lipids, signaling cascades, mitochondrial and vacuolar functions” FEBS JOURNAL  281, 1281-1303  

57.          Yilmaz, OG; Olmez, EO; Ulgen, KO 2014 “Targeting the Akt1 allosteric site to identify novel scaffolds through virtual screening” COMPUTATIONAL BIOLOGY AND CHEMISTRY  48, 1-13  

58.          Yuksel, S; Eren, E; Hatemi, G ; Sahillioglu, AC; Gultekin, Y ; Demiroz, D  ; Akdis, C ; Fresko, I; Ozoren, N 2014 ”Novel NLRP3/cryopyrin mutations and pro-inflammatory cytokine profiles in Behets syndrome patients” INTERNATIONAL IMMUNOLOGY 

59.          Ozbuyukkaya, G; Olmez, EO; Ulgen, Kutlu O 2014 “Aminopurine derivatives as putative SopE inhibitors” JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY  29, 137-145  


61.          Karahan, O; Balta, DK; Arsu, N; Avcı, D  2014 “Synthesis and evaluations of novel photoinitiators with side-chain benzophenone, derived from alkyl alpha-hydroxymethacrylates” JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY A-CHEMISTRY  274, 43-49  

62.          Du, WJ; Yuan, GC; Wang, MJ; Han, CC; Satija, SK; Akgun, B 2014 “Initial Stages of Interdiffusion between Asymmetrical Polymeric Layers: Glassy Polycarbonate and Melt Poly(methyl methacrylate) Interface Studied by Neutron Reflectometry” MACROMOLECULES  47, 713-720  

63.          Boduroglu, A; Shah, P 2014 “Configural representations in spatial working memory” VISUAL COGNITION  22, 102-124  

64.          Sertbas, M; Ulgen, K; Cakir, T 2014 “Systematic analysis of transcription-level effects of neurodegenerative diseases on human brain metabolism by a newly reconstructed brain-specific metabolic network” FEBS OPEN BIO  4, 542-553  

65.          Arslan, M; Gevrek, T N; Sanyal, A; Sanyal R 2014 “Cyclodextrin mediated polymer coupling via thiol-maleimide conjugation: facile access to functionalizable hydrogels” RSC ADVANCES  4, 57834-57841  

66.          Padhye, L P; Tezel, U 2014 “Fate of Environmental Pollutants”  WATER ENVIRONMENT RESEARCH  86, 1714-1773  

67.          Cinar, SA; Ercan, S; Gunal, SE; Dogan, I; Aviyente, V 2014 “The origin of exo-stereoselectivity of norbornene in hetero Diels-Alder reactions” ORGANIC & BIOMOLECULAR CHEMISTRY  12, 8079-8086  

68.          Sen, I; Saraclar, M; Kahya, YP 2014 “Computerized Diagnosis of Respiratory Disorders SVM Based Classification of VAR Model Parameters of Respiratory Sounds” METHODS OF INFORMATION IN MEDICINE  53,291-295  

69.          Asada, M; Jiang, NS; Sendogdular, L; Sokolov, J; Endoh, MK; Koga, T ; Fukuto, M; Yang, L ; Akgun, B; Dimitrioug, M; Satija, S 2014 “Melt crystallization/dewetting of ultrathin PEO films via carbon dioxide annealing: the effects of polymer adsorbed layers” SOFT MATTER  10, 6392-6403

70.          Bayram, H; Bozma, HI 2014 “Decentralized network topologies in multirobot systems” ADVANCED ROBOTICS  28, 967-982  

71.          Beria,L; Gevrek, TN; Erdog, A ; Sanyal, R; Pasini, D; Sanyal, A 2014 “'Clickable' hydrogels for all: facile fabrication and functionalization” BIOMATERIALS SCIENCE  2, 67-75

72.          Akgul, T; Gulsoy, M; Gulcur, HO 2014 “Effects of early and delayed laser application on nerve regeneration” LASERS IN MEDICAL SCIENCE  29,351-357

73.          Ozaltin, TF; Dereli, B; Karahan, O; Salman, S ; Aviyente, V 2014 “Solvent effects on free-radical copolymerization of styrene and 2-hydroxyethyl methacrylate: a DFT study” NEW JOURNAL OF CHEMISTRY  38, 170-178 

74.          Unutulmaz, A; Dundar, G; Fernandez, FV 2014 “Template coding with LDS and applications of LDS in EDA” ANALOG INTEGRATED CIRCUITS AND SIGNAL PROCESSING  78, 137-151

75.          Cicek, I; Pusane, Ali E; Dundar, G 2014 “A novel design method for discrete time chaos based true random number generators” INTEGRATION-THE VLSI JOURNAL  47, 38-47