Center-Weighted, Based on Studies Made with the Contribution of the Center

Aytaç-Kipergil, E., Demirkıran, A., Uluç, N., et al., “ Development of a Fiber Laser with

          Independently Adjustable Properties for Optical Resolution Photoacoustic Microscopy ”,

          Scientific Reports, 6, 38674, 2016.

Avcı, FG, Altınışık, FE, Vardar Ulu, D., et al., “ An Evolutionarily Conserved Allosteric Site

          Modulates Beta-Lactamase Activity ”, Journal of Enzyme Inhibition and Medicinal

          Chemistry, 31, 3, 33-40, 2016.

Jiang, N., Sendoğdular, L., Şen, M., et al., “ Novel Effects of Compressed CO2 Molecules on

          Structural Ordering and Charge Transport in Conjugated Poly(3-hexylthiophene) Thin

          Films ”, Langmuir, 32, 42, 10851-10860, 2016.

Nouizi, F., Erkol, H., Luk, A., et al., “ An Accelerated Photo-Magnetic Imaging Reconstruction

          Algorithm Based on an Analytical Forward Solution and a Fast Jacobian Assembly Method ”,

          Physics in Medicine and Biology, 61, 20, 7448-7465, 2016.

Eren, TN, Ökte, N., Morlet-Savary, F., et al., “ One-Component Thioxanthone-Based Polymeric

          Photoinitiators ”, Journal of Polymer Science Part A-Polymer

          Chemistry, 54, 20, 3370-3378, 2016.

Sun, L., Akgün, B., Narayanan, S., et al., “ Surface Fluctuations of Polymer Brushes Swollen in Good

          Solvent Vapor ”, Macromolecules, 49,19, 7308-7313, 2016.

Alaybeyoğlu, B., Duranel, A., Özkırımlı, E., “  Uptake Mechanism of the Cell-Penetrating Peptide

          pVEC: How Does the Hydrophobic N-terminus Contribute? ”, Conference: 30th Anniversary

          Symposium of the Protein-Society Location: Baltimore, Sponsor(s): Protein Soc

          Protein Science, 25, S1, 121-122, 2016.

Nouizi, F., Erkol, H., Luk, A., et al., “ Real-Time Photo-Magnetic Imaging ”, Biomedical Optics

          Express, 7, 10, 3899-+, 2016.

Özaltın, T., Furuncuoğlu, K., Berkehan, Çatak, Ş., et al., “ Effect of Lewis acids on the

          Stereoregularity of N,N-dimethyl acrylamide: A computational Approach ”, European 

          Polymer Journal, 83, 67-76, 2016.

Dikici, E., Saraçlar, M., “ Semi-Supervised And Unsupervised Discriminative Language Model

          Training For Automatic Speech Recognition ”, Speech Communication, 83, 54-63, 2016.

Pamuk, U., Karakuzu, A., Öztürk, C., et al., “ Combined Magnetic Resonance and Diffusion Tensor

          Imaging Analyzes Provide aPowerful Tool for in Vivo Assessment of Deformation Along

          Human Muscle Fibers ”, Journal of The Mechanical Behavior of Biomedical Materials, 63, 

          207-219, 2016.

Çınar, SA, Güven, MN, Eren, TN, et al., “ Structure-Reactivity Relationships of Novel Monomeric

          Photoinitiators ”, Journal of Photochemistry and Photobiology A-Chemistry, 329, 77-87,

          2016.

Johannesen, K., Marini, C., Pfeffer, S., et al., “ Phenotypic Spectrum of GABRA1: From Generalized

          Epilepsies to Severe Epileptic Encephalopathies ”, Neurology, 87, 11, 1140-1151, 2016.

Yasa, S., Sahillioğlu, AC, Özören, N., “ The ASC Speck as Novel Antigen Carrier  Conference: 41st

          FEBS Congress on Molecular and Systems Biology for a Better Life Location”, Kuşadası,

          Turkey, Date: SEP 03-08, 2016, Sponsor(s): Febs Journal, 283, SI, 1, 112-112, Meeting

          Abstract, 2016.

Acuner-Özbabacan, SE, Sümbül, F., Torun, H., et al., “ Mutation Induced Allosteric Regulation of

          Rac1-PAK1 Binding Affinity Investigated Via Molecular Simulations and AFM ”,

          Conference: 41st FEBS Congress on Molecular and Systems Biology for a Better

          Life Location: Kusadasi, TURKEY, Sponsor(s): Febs Journal, 283, SI, 1, 113-113, Meeting

          Abstract, 2016.

Yıldız, N., Ayhan, MC, Emre, NCT, “ Investigating The Role of Interferon Regulatory Factor 4 in

          Melanoma Cell Lines ”, Conference: 41st FEBS Congress on Molecular and Systems Biology

          for a Better Life Location: Kusadasi, Turkey, Sponsor(s):, Febs Journal, 283, SI, 1,

          255-255, Meeting Abstract, 2016.

Sobhiafshar, U., Yılmaz, E., Emre, NCT, “ Identification and Analysis of Interferon Regulatory

          Factor 4 Target Genes in Melanoma Via High-Throughput Sequencing of

          Immunoprecipitated Chromatin ”, Conference: 41st FEBS Congress on Molecular and

          Systems Biology for a Better Life Location: Kuşadası, Turkey, Sponsor(s):Febs Journal, 283

          SI, 1,258-258, Meeting Abstract, 2016.

Yıldız, F., Gülsoy, M., Çilesiz, I., “ 5 An Experimental Study on Photothermal Damage to Tissue: The

          Role of Irradiance and Wavelength ”, Laser Physics, 26, 9, 2016.

Özmen-Okur, Ö., Öztürk, C., “ Effects of Unmodulation and Thresholding by Average-Based

          Masking on Voxel-Based Morphometry ”, Journal of Medical Imaging and Health

          Informatics, 6, 5, 1178-1185, 2016.

Dündar, G., Horta, N., Fernandez, FV, “ Introduction to the Special Issue on SMACD 2015 ”,

          Integration-The Vlsi Journal, 55, SI, 293-294, 2016.

Afacan, E., Berkol, G., Dündar, G., et al., “ A Lifetime-Aware Analog Circuit Sizing Tool ”,

          Integration-The Vlsi Journal, 55, SI, 349-356, 2016.

Pak, M., Fernandez, FV, Dundar, G., “ Comparison of QMC-Based Yield-Aware Pareto Front

          Techniques for Multi-Objective Robust Analog Synthesis ”, Integration-The Vlsı Journal, 55,

          SI, 357-365, 2016.

Sağlamdemir, MO, Berkol, G., Dundar, G., et al., “ An Analog Behavioral Equivalence Boundary

          Search Methodology for Simulink Models and Circuit Level Designs Utilizing Evolutionary

          Computation ”, Integration-The VSI Journal, 55, SI, 366-375, 2016.

Kürkçüoğlu, Z., Bahar, I., Doruker, P., “ ClustENM: ENM-Based Sampling of Essential

          Conformational Space at Full Atomic Resolution ”, Journal of Chemical Theory and

          Computation, 12, 9, 4549-4562, 2016.

Çetinkaya-Fisgin, A., Joo, MG, Ping, X., et al., “ Identification of Fluocinolone Acetonide to Prevent

          Paclitaxel-Induced Peripheral Neuropathy ”, Journal of the Peripheral Nervous System, 21,

          3, 128-133, 2016.

Akçay, H., Durmuş, H., Deymeer, F., et al., “ Charcot-Marie-Tooth Disease in Turkey: Clinical and

          Genetic Findings from a Single-Centre Experience” , Conference: Inflammatory Neuropathy

          Consortium and GBS 100 Centenary Symposium and Ceilidh Location: Univ Glasgow,

          Glasgow, SCOTLAND Date: JUN 21-24, 2016, Sponsor(s): Baxalta; CSL Behring; Grifols;

          Kedrion Sp A; GBS CIDP Fdn Int; Guillain Barre Associated Inflammatory Neuropathies;

          LFB Biomedicaments; Octapharma; Teva Journal of the Peripheral Nervous System, 21, 3,

          230-231, 2016.

Battaloğlu, E., Estrada-Cuzcano, A., Atkinson, D., et al., “ Spg11 Is an Overlapping Gene Between

          Charcot-Marie-Tooth Disease and Hereditary Spastic Paraplegia ”,Conference: Inflammatory

          Neuropathy Consortium and GBS 100 Centenary Symposium and Ceilidh Location: Univ

          Glasgow, Glasgow, SCOTLAND Date: JUN 21-24, 2016, Sponsor(s): Baxalta; CSL Behring;

          Grifols; Kedrion Sp A; GBS CIDP Fdn Int; Guillain Barre Associated Inflammatory

          Neuropathies; LFB Biomedicaments; Octapharma; Teva Journal of the Peripheral Nervous

          System, 21, 3, 238-239, 2016.

Candayan, A., Sıvacı, M., Parman, Y., et al., “ Mitofusin 2 Gene Mutations in a Turkish Charcot

          Marie-Tooth Disease Cohort ”, Conference: Inflammatory Neuropathy Consortium and GBS

          100 Centenary Symposium and Ceilidh Location: Univ Glasgow, Glasgows, 

          SCOTLAND Date: JUN 21-24, 2016, Sponsor(s): Baxalta; CSL Behring; Grifols; Kedrion Sp A;

          GBS CIDP Fdn Int; Guillain Barre Associated Inflammatory Neuropathies; LFB

          Biomedicaments; Octapharma; Teva Journal of the Peripheral Nervous System, 21, 3,

          242-242, 2016.

Erol, AM, Kılıç, AK, Çelik, A., et al., ” Brait-Fahn-Schwarz Disease: Parkinson’s Disease and

          Amyotrophic Lateral Sclerosis Complex ”, Acta Neurologica Belgica, 116, 3, 401-403, 2016.

Mavioğlu, RN, Duman, EA, “ Changes in HPA-Axis Reactivity By Subjective Well-Being: Impact of

          Loneliness, Gender and Serotonin Transporter Genotype ”, Conference: 46th Annual

          Conference of the International-Society-of-Psychoneuroendocrinology – Personalized

          Medicine in the Neurosciences – Genetics, Imaging, and Hormones Location: Miami,

          FL Date: SEP 08-11, 2016, Sponsor(s): Int Soc Psychoneuroendocrinol

          Psychoneuroendocrinology, 71, p, 17-18, 2016.

Ergin, KC, Dedeoğlu, G., Duman, EA,  Interaction Between Childhood Maltreatment, Trait

          Anxiety and Serotonin Transporter Genotype on Cortisol Awakening Response ”,

          Conference: 46th Annual Conference of the International-Society-of-

          Psychoneuroendocrinology – Personalized Medicine in the Neurosciences – Genetics,

          Imaging, and Hormones Location: Miami, FL Date: SEP 08-11, 2016, Sponsor(s): Int Soc

          Psychoneuroendocrinol Psychoneuroendocrinology, 71, P, 30-31, 2016.

Adıyan, U., Çivitçi, F., Ferhanoğlu, O., et al., “ A Prism-Based Optical Readout Method for MEMS

          Bimaterial Infrared Sensors ”, IEEE Photonics Technology Letters, 28, 17, 1866-1869, 2016.

Turan, HT, Eken, Y., Marazzi, M., et al., “ Assessing One- and Two-Photon Optical Properties of

          Boron Containing Arenes ”, journal of physical chemistry, 120, 32, 17916-17926, 2016.

Öz, Y., Arslan, M., Gevrek, TN, et al., “ Modular Fabrication of Polymer Brush Coated Magnetic

          Nanoparticles: Engineering the Interface for Targeted Cellular Imaging ”, ACS Applied

          Materials & Interfaces, 8, 30, 19813-19826, 2016.

Mignot, Cyril; von Stuelpnagel, Celina; Nava, Caroline; et al., “ Genetic and Neurodevelopmental

          Spectrum of SYNGAP1-Associated Intellectual Disability and Epilepsy ”, Group

          Author(s): Euro Epinomics-Res Mae Working Grp, Journal of Medical Genetics, 53, 8,

          511-522, 2016.

Yavuz, B., Pehlivan, S., B., Bolu, BS, et al., “ Dexamethasone – PAMAM Dendrimer Conjugates for

          Retinal Delivery: Preparation, Characterization and in Vivo Evaluation ”, Journal of

          Pharmacy and Pharmacology, 68, 8, 1010-1020, 2016.

Kwong, TC, Hsing, M., Lin, Y., et al., “ Differentiation of Tumor Vasculature Heterogeneity Levels

          in Small Animals Based on Total Hemoglobin Concentration Using Magnetic Resonance

          Guided Diffuse Optical Tomography in Vivo ”, Applied Optics, 55, 21, 5479-5487, 2016.

Özgür, C., Doruker, P., Akten, ED, “ Investigation of Allosteric Coupling in Human Beta(2)-

          Drenergic Receptor in The Presence of Intracellular Loop 3 ”, BMC Structural Biology, 16, 9,

          2016.

Afacan, E., Berkol, G., Dündar, G., et al., “ An Analog Circuit Synthesis Tool Based on Efficient and

          Reliable Yield Estimation ”, Microelectronics Journal, 54, 14-22, 2016.

Eren, TN, Yaşar, N., Aviyente, V., et al., “ Photophysical and Photochemical Studies of Novel

          Thioxanthone-Functionalized Methacrylates through LED Excitation ”, Macromolecular

          Chemistry and Physics, 217, 13, 1501-1512, 2016.

Usluer, S., Salar, S., Arslan, M., et al., “ SCN1A Gene Sequencing in 46 Turkish Epilepsy Patients

          Disclosed 12 Novel Mutations ”, Seizure-European Journal of Epilepsy, 39, 34-43, 2016.

Duru, I., Ege, D., Kamali, AR, “ Graphene Oxides For Removal of Heavy and Precious Metals From

          Wastewater ”, Journal of Materials Science, 51,13, 6097-6116, 2016.

Kürkçüoğlu, Z., Doruker, P., “ Ligand Docking to Intermediate and Close-To-Bound Conformers

          Generated by an Elastic Network Model Based Algorithm for Highly Flexible Proteins ”, Plos

          One, 11, 6, 2016.

Bilgin, R., Ebeoğlu, N., Inak, S., et al., “ DNA Barcoding of Birds at a Migratory Hotspot in Eastern

          Turkey Highlights Continental Phylogeographic Relationships ”, Plos One, 11, 6, 2016.

Bilgin, Habib; Zakhartar, Shahrzad; Sadeghzadeh, Seyedehayda; et al., “ A MEMS-Based Terahertz

          Detector With Metamaterial-Based Absorber and Optical Interferometric Readout ”,

          Conference: EUROSENSORS Conference Location: Freiberg, GERMANY Date: SEP 06-09,      

          2015 Sensors and Actuators A-Physical, 244, 292-298, 2016.

Sun, L., Akgün, B., Hu, R., et al., “ Scaling Behavior and Segment Concentration Profile of Densely

          Grafted Polymer Brushes Swollen in Vapor ”, Langmuir, 32, 22, 5623-5628, 2016.

Sevim, S., Shamsudhin, N., Özer, S., et al., “ An Atomic Force Microscope with Dual Actuation

          Capability for Biomolecular Experiments ”, Scientific Reports, 6, 2016.

Demirkan, I., Sarp, A., Kabas, S., Gülsoy, M., “ Ceramic Bracket Debonding With Tm:Fiber Laser ”,

          Journal of Biomedical Optics, 21, 6, 2016.

Kalaoğlu-Altan, O.I., Verbraeken, B., Lava, K., et al., “ Multireactive Poly(2-oxazoline) Nanofibers

          through Electrospinning with Crosslinking on the Fly ”, Acs Macro Letters, 5, 6, 676-681,

          2016.

Tanrıver, G., Dedeoğlu, B., Çatak, Ş., et al., “ Computational Studies on Cinchona Alkaloid

          Catalyzed Asymmetric Organic Reactions ”, Accounts of Chemical Research, 49, 6, 1250-

          1262, 2016.

Kancheva, D., Atkinson, D., De Rijk, P., et al., “ Novel Mutations in Genes Causing Hereditary

          Spastic Paraplegia and Charcot-Marie-Tooth Neuropathy Identified by an Optimized

          Protocol for Homozygosity Mapping Based on Whole-Exome Sequencing ”,

          Genetics in Medicine,  18, 6, 600-607, 2016.

Ateş, F., Temelli, Y., Yücesoy, CA, “ The Mechanics of Activated Semitendinosus Are Not

          Representative of the Pathological Knee Joint Condition of Children with Cerebral Palsy ”,

          Journal of Electromyography and Kinesiology,  28, 130-136, 2016.

Bilgin, R., Gurun, K., Rebelo, H., et al., “ Circum-Mediterranean Phylogeography of a Bat Coupled

          with Past Environmental Niche Modeling: A New Paradigm for the Recolonization of

          Europe? ”,  Molecular Phylogenetics and Evolution,   99, 323-336, 2016.

Türkoğlu, AN, Yücesoy, CA, “ Simulation of Effects of Botulinum Toxin on Muscular Mechanics

          in Time Course of Treatment Based on Adverse Extracellular Matrix Adaptations ”,  Journal

          of Biomechanics,   49, 7, 1192-1198, 2016.

Bolu, BS, Gecici- Manavoglu, E., Sanyal, R., “ Combretastatin A-4 Conjugated Antiangiogenic

          Micellar Drug Delivery Systems Using Dendron-Polymer Conjugates ”,  Molecular

          Pharmaceutics,  13, 5, 1482-1490, 2016.

Çevrim, Ç., Mika, K., Callaerts, P., et al., “ Unzipped Mediates Drosophila Mushroom Body

          Development Through Neuron-Glia Interactions. ”, Conference: 25th Annual Meeting of the

          European-Chemoreception-Research-Organization (ECRO) Location: Bogazici Univ,

          Istanbul, Turkey, Date: SEP 01-05, 2015, Sponsor(s): European Chemorecept Res Org,    

          Chemical Senses,  41, 4, 403-404, 2016.

Ertekin, E., Hatt, J., Konstantinidis, K., Konstantinos, T., et al. “ Similar Microbial Consortia and

          Genes Are Involved in the Biodegradation of Benzalkonium Chlorides in Different

          Environments ”,  Environmental Science & Technology,   50, 8, 4304-4313, 2016.

Wang, W., Xu, Y., Backes, S., et al., “ Construction of Compact Polyelectrolyte Multilayers Inspired

          by Marine Mussel: Effects of Salt Concentration and pH As Observed by QCM-D and AFM ”,

          Langmuir,   32, 14, 3365-3374, 2016.

Kaga, S., Arslan, M., Sanyal, R., et al.,” Dendrimers and Dendrons as Versatile Building Blocks for

          the Fabrication of Functional Hydrogels ”,  Molecules,  21, 4, 497, 2016.

Kaga, S., Gevrek, TN, Sanyal, A., et al., “ Synthesis and Functionalization of Dendron-Polymer

          Conjugate Based Hydrogels via Sequential Thiol-Ene “Click” Reactions ”, Journal of Polymer

          Science Part A-Polymer Chemistry,  54, 7, 926-934, 2016.

Öztürk, H., Özkırımlı, E., Özgür, A.,  “ A Comparative Study of SMILES-Based Compound Similarity

          Functions for Drug-Target Interaction Prediction ”,  Bmc Bioinformatics  , 17, 128, 2016.

Akkan, Ç.K., Hür, D., Uzun, L., et al., “ Amino Acid Conjugated Self Assembling Molecules for

          Enhancing Surface Wettability of Fiber Laser Treated Titanium Surfaces ”,  Applied Surface

          Science,  366, 284-291, 2016.

Torun, H., Sadeghzadeh, S., Bilgin, H., et al., “ A Micromachined Freestanding Terahertz Absorber

          with an Array of Metallic Patches ”,  Aip Advances,   6, 3, 2016.

Topaloğlu, N., Güney, M., Aysan, N., et al., “ The Role of Reactive Oxygen Species in the

          Antibacterial Photodynamic Treatment: Photoinactivation Vs Proliferation ”,  Letters in

          Applied Microbiology,  62, 3, 230-236, 2016.

Acuner-Özbabacan, SE, Sumbul, F., Torun, H., et al., “ Allosteric Regulation of Rac1-PAK1 Binding

          Affinity by Mutant Residues through Molecular Simulations and AFM ”, Conference: 60 ^th

          Annual Meeting of the Biophysical-Society Location: Los Angeles, CA Date: FEB 27-MAR 02

          2016, Sponsor(s): Biophys Soc,  Biophysical Journal,  110, 3, 1, 383A-383A, Meeting

          Abstract: 1891-Pos, 2016.

Çirkinoğlu, HO, Bilgin, H., Çivitçi, F., et al., “ Fiber Temperature Sensor Utilizing a

          Thermomechanical MEMS Detector ”,  Journal of Lightwave Technology,   34, 3.1025-1030,

          2016.

Güveli, S., Cinar, SA, Karahan, Ö., et al. “ Nickel(II)-PPh3 Complexes of S,N-Substituted

          Thiosemicarbazones – Structure, DFT Study, and Catalytic Efficiency ”,  European Journal of

          Inorganic Chemistry,  4, 538-544, 2016.

Afacan, E., Dündar, G., Pusane, AE, et al., “ Semi-Empirical Aging Model Development Via

          Accelerated Aging Test ”, Book Group Author(s): IEEE Conference: 13 ^th  International

          Conference on Synthesis, Modeling, Analysis and Simulation Methods and Applications to

          Circuit Design (SMACD) Location: Lisbon, Portugal Date: JUN 27-30, 2016.

Afacan, E., Dündar, G., Pusane, AE, et al., “ Efficient Signature Selection Tool for Sense & React

          Systems ”, Book Group Author(s): IEEE Conference: 13 ^th  International Conference on

          Synthesis, Modeling, Analysis and Simulation Methods and Applications to Circuit Design

          (SMACD) Location: Lisbon, Portugal Date: JUN 27-30, 2016.

Batur, OZ, Dundar, G., Koca, M., “ MATLAB & VHDL-AMS Co-Simulation Environment for IR-UWB

          Transceiver Design ”, Book Group Author(s): IEEE Conference: 13 ^th  International

          Conference on Synthesis, Modeling, Analysis and Simulation Methods and Applications to

          Circuit Design (SMACD) Location: Lisbon, PORTUGAL Date: JUN 27-30, 2016.Bottom of Form

Demir, K., Bilgin, H., Şahin, AB, et al., “ Design of a Frequency Reconfigurable, Terahertz Antenna

          for Photomixers ”, Book Group Author(s): IEEE Conference: 41st International Conference

          on Infrared, Millimeter, and Terahertz Waves (IRMMW-THz) Location: Copenhagen,

          Denmark Date: SEP 25-30, 2016. Sponsor(s): DTU; IEEE; QMC Instruments; Danish Ct.

          Laser Infrastructure; DTU Photonics, Dept Photon Engn; ARL; CARLSBERG FDN; AF OFF SCI

          RES; Tech Univ Denmark; IEEE Microwave Theory & Tech Soc; Azpect Photon; expla;

          Hubner HF SystEngn; I2S; Laser Quantum; Menlo Syst; Neaspec; springer; TeraView, 

          Virginia Diodes 2016 41st International Conference on Infrared, Millimeter, and Terahertz

          Waves (Irmmw-Thz) Book Series: International Conference on Infrared Millimeter and

          Terahertz Waves Published: 2016

Sari, L., Saraçlar, M., “ Score Normalization for Keyword Search ”, Book Group Author(s): IEEE

          Conference: 24th Signal Processing and Communication Application Conference

          (SIU) Location: Zonguldak, Turkey Date: MAY 16-19, 2016 Sponsor(s): IEEE; Bulent Ecevit

          Univ, Dept Elect & Elect Engn; Bulent Ecevit Univ, Dept Biomed Engn; Bulent Ecevit Univ,

          Dept Comp Eng., 761-764, 2016.

Gündoğdu, B., Sarı, L., Çetinkaya, G., et al., “ Template-Based Keyword Search with Pseudo

          Posteriorgrams ”, Book Group Author(s): Sponsor(s): IEEE; Bulent Ecevit Univ, Dept Elect &

          ElectEngn; Bulent Ecevit Univ, Dept Biomed Engn; Bulent Ecevit Univ, Dept Comp Engn

          2016 24th Signal Processing and Communication Application Conference

          (SIU), 973-976, 2016.

Çamlı, B., Kuşakçı, E., Lafçı, B., et al., “ A Microwave Ring Resonator Based Glucose Sensor ”, Edited

          by: Barsony, I., Zolnai, Z., Battistig, G., Conference: 30th Eurosensors

          Conference Location: Budapest, HUNGARY Date: SEP 04-07, 2016

          Proceedings of the 30th Anniversary Eurosensors Conference – Eurosensors 2016 Book

          Series: Procedia Engineering Volume: 168 Pages: 465-468 Published: 2016.

Cirkinoğlu, HO, Bilgin, H., Çivitçi, F., et al., “ Fiber Temperature Sensor Utilizing A

          Thermomechanical MEMS Detector ”, Edited by: Yin, S; Guo, R., Conference: Conference on

          Photonic Fiber and Crystal Devices – Advances in Materials and Innovations in Device

          Applications X Location: San Diego, CADate: AUG 28-29, 2016. Sponsor(s): Spi 

          Photonic Fiber and Crystal Devices: Advances in Materials and Innovations in Devices

          Applications X, Book Series: Proceedings of SPIE, 9958, 2016.

Altındağ, E., Usluer, S., Gündoğdu, A., et al., “ Late-Onset Myoclonic Epilepsy in Down Syndrome:

          Investigation of EPM1 Gene Mutations in two Cases ”,  Journal of Neurological Sciences

          Turkish,  33, 1, 132-137, 2016.

Cagavi, E., Özören, N., “ Editorial “Stem Cells: Biology, Genetics, and Epigenetics” ,  Turkish Journal

          of Biology,  40, 5, I-II, 2016.

Gökbulut, B., Inci, MN, “ An Interferometric Vibration Sensor Based on a Four-core Optical

          Fiber ”, Edited by: Berghmans, F., Mignani, AG, Conference: Conference on Optical Sensing

          and Detection IV Location: Brussels, Belgium Date: APR 03-07, 2016, Sponsor(s): SPIE;

          Brussels Photon Team; Res Fdn Flanders; Visit Brussels Optical Sensing and Detection

          IV, Book Series: Proceedings of SPIE, 9899, ​​Article Number: UNSP 989920-1, 2016.

Vardar, Y., Güçlü, B., Başdoğan, Ç., “ Effect of Waveform in Haptic Perception of Electrovibration

          on Touchscreens ”, Edited by: Bello, F., Kajimoto, H., Visell, Y., Conference: 10 ^th  International

          Conference on Haptics – Perception, Devices, Control, and Applications

          (EuroHaptics) Location: Imperial Coll London, London, England Date: JUL 04-07, 2016

          Sponsor(s): CEA; EPSRC UK RAS Network; Force Dimens; Lofelt; moog; ShadowRobot;

          Valeo; Gene Robot; haption; Optoforce Ltd; Prototouch; Actronika; Disney Res; IET Robot

          & Mechatron TPN; springer; Ocado Technol; Right Hand Robot; Tactile Labs Inc.; canvas

          Haptics: Perception, Devices, Control and Applications, Eurohaptics 2016, PT I    Book

          Series: Lecture Notes in Computer Science, 9774, 190-203, 2016.

Alma, UA, Ilkhani, G., Samur, E., “ On Generation of Active Feedback with Electrostatic

          Attraction ”, Edited by: Bello, F., Kajimoto, H., Visell, Y., Conference: 10th International

          Conference on Haptics – Perception, Devices, Control, and Applications

          (EuroHaptics) Location: Imperial Coll London, London, England Date: JUL 04-07, 2016,

          Sponsor(s): CEA; EPSRC UK RAS Network; Force Dimens; Lofelt; moog; ShadowRobot;

          Valeo; Gene Robot; haption; Optoforce Ltd; Prototouch; Actronika; Disney Res; IET Robot

          & Mechatron TPN; springer; Ocado Technol; Right Hand Robot; Tactile Labs Inc.; canvas

          Haptics: Perception, Devices, Control and Applications, Eurohaptics 2016, PT II    Book

          Series: Lecture Notes in Computer Science, 9775, 449-458, 2016.

Afacan, E., Dündar, G., “ A Mixed Domain Sizing Approach for RF Circuit Synthesis ”, Edited

          by: Brenkus, J., Stopjakova, V., Conference: IEEE 19th International Symposium on Design

          and Diagnostics of Electronic Circuits & Systems (DDECS) Location: Kosice,

          Slovakia Date: APR 20-22, 2016, Sponsor(s): IEEE Council Elect Design Automat; IEEE

          Comp Soc; Slovak Univ. Technol, Fac Elect Engn & Informat Technol; Slovak Univ Technol,

          Fac Informat & Informat Technologies; Slovak Acad Sci, Inst Informat 2016 IEEE 19th

          International Symposium on Design and Diagnostics of Electronic Circuits & Systems

          (DDECS) Book Series: IEEE International Symposium on Design and Diagnostics of

          Electronic Circuits & Systems, 80-83, 2016.

Sevim, S., Özer, S., Feng, L., et al., “ Dually Actuated Atomic Force Microscope with Miniaturized

          Magnetic Bead-Actuators for Single-Molecule Force Measurements ”, Nanoscale Horizons, 1,

          6, 488-495, 2016.

Alaybeyoğlu, B., Akbulut, BS, Özkırımlı, E., “ Insights into Membrane Translocation of the Cell

          Penetrating Peptide Pvec From Molecular Dynamics Calculations ”,  Journal of Biomolecular

          Structure & Dynamics,  34, 11, 2387-2398, 2016.

Kösoğlu, G., Yüksel, H., İnci, MN, “ 3D Phase Stepping Optical Profilometry Using a Fiber Optic

          Lloyd’s Mirror ”, Edited by: Schelkens, P., Ebrahimi, T., Cristobal, G., et al.,

          Conference: Conference on Optics, Photonics and Digital Technologies for Imaging

          Applications IV Location: Brussels, Belgium Date: APR 05-06, 2016, Sponsor(s): SPIE;

          Brussels Photon Team; Res Fdn Flanders; Visit Brussels, Optics, Photonics and Digital

          Technologies for Imaging Applications IV Book Series: Proceedings of SPIE, 9896, 2016.

İşeri, E., Ülgen, KO, Yılmaz, Ç., et al., “ Fabrication of Steel Displacement Amplifiers Integrated to

          Microfluidic Channels ”, Book Group Author(s): IEEE Conference: 29th IEEE International

          Conference on Micro Electro Mechanical Systems (MEMS) Location: Shanghai, PEOPLES R

          CHINA Date: JAN 24-28, 2016, Sponsor(s): IEEE; IEEE Robot & Automat Soc

          2016 IEEE 29th International Conference on Micro Electro Mechanical Systems (MEMS), 

          Book Series: Proceedings IEEE Micro Electro Mechanical Systems, 493-496, 2016.

Altınbaşak, I., Sanyal, R., Sanyal, A., “ Best of Both Worlds: Diels-Alder Chemistry Towards

          Fabrication of Redox-Responsive Degradable Hydrogels for Protein Release ”,  RSC

          Advances,  6, 78, 74757-74764, 2016.

Alagha, HZ, Gülsoy, M., “ Photothermal Ablation of Liver Tissue with 1940-Nm Thulium Fiber

          Laser: An Ex Vivo Study on Lamb Liver ”,  Journal of Biomedical Optics,  21, 1, 2016.

Uğur, G., Akgün, B., Jiang, Z., et al., “ Effect of Tethering on The Surface Dynamics of a Thin

          Polymer Melt Layer ”,  Soft Matter,  12, 24, 5372-5377, 2016.

Erkol, H., Nouizi, F., Luk, AT, et al. “ A New Analytical Approach for Heat Generation in Tissue

          Due to Laser Excitation (Conference Presentation) ”, Edited by: Jansen, ED

          Conference: Conference on Optical Interactions with Tissue and Cells XXVII Location: San

          Francisco, CA Date: FEB 14-17, 2016, Sponsor(s): SPIE, Optical Interactions with Tissue

          and Cells XXVII Book Series: Proceedings of SPIE, 9706, 2016.

Kaya, Ö., Gülsoy, M., “ A Non-Contact Temperature Measurement System for Controlling

          Photothermal Medical Laser Treatments ”, Edited by: Jansen, ED, Conference: Conference  

          on Optical Interactions with Tissue and Cells XXVII Location: San Francisco, CA Date: FEB

          14-17, 2016, Sponsor(s): SPIE Optical Interactions With Tissue and Cells XXVII Book

          Series: Proceedings of SPIE, 9706, 2016.

Ruhi, MK, Ak, A., Gülsoy, M., “ Efficiency of Photodynamic Therapy Using İndocyanine Green and

          Infrared Light on MCF-7 Breast Cancer Cells in Vitro ”, Edited by: Kessel, DH, Hasan, T.,

          Conference: Conference on Optical Methods for Tumor Treatment and Detection –  

          Mechanisms and Techniques in Photodynamic Therapy XXV Location: San Francisco,  

          CA Date: FEB 13-14, 2016, Sponsor(s): SPIE, Optical Methods for Tumor Treatment and

          Detection: Mechanisms and Techniques in Photodynamic Therapy XXV, Book

          Series: Proceedings of SPIE, 9694, 2016.

Eribol, P., Uğuz, AK, Ülgen, KO, “ Screening Applications in Drug Discovery Based on

          Microfluidic Technology ”,  Biomicrofluidics,   10, 1, 2016.

Sarp, AS, Gülsoy, M., “ Comparing Irradiation Parameters on Disinfecting Enterrecoccus Faecalis

          in Root Canal Disinfection ”, Edited by: Rechmann, P., Fried, D., Conference: Conference on  

          Lasers in Dentistry XXII Location: San Francisco, CA Date: FEB 14, 2016, Sponsor(s): SPIE

          Lasers in Dentistry XXII Book Series: Proceedings of SPIE, 9692, 2016.

Akcan, S., “ Novice Non-Native English Teachers’ Reflections on Their Teacher Education

         Programmes and Their First Years of Teaching ”, Profile-Issues in Teachers Professional

         Development, 18, 1, 55-70, 2016.

Yıldırım, A., Türkaydın, M., Garipcan, B., et al., “ Cytotoxicity of Multifunctional Surfactant

          Containing Capped Mesoporous Silica Nanoparticles ”, RSC

          Advances,  6, 38, 32060-32069, 2016.

Deniz, U., Özkırımlı, E., Ülgen, KO, “ A Systematic Methodology for Large Scale Compound

          Screening: A Case Study on the Discovery of Novel S1PL Inhibitors ”,  Journal of Molecular  

          Graphics & Modeling,  63, 110-124, 2016.

Kömürcü, G. Pusane, AE, Dündar, G., “ Effects of Aging and Compensation Mechanisms in

          Ordering Based RO-PUFs ”,  Integration-The Visi Journa,  52, 71-76, 2016.

1. Campbell-Washburn, Adrienne E.; Rogers, Toby; Basar, Burcu; Sonmez, Merdim; Kocaturk Ozgur; Lederman, Robert J.; Hansen, Michael S.; Faranesh, Anthony Z.; “Positive contrast spiral imaging for visualization of commercial nitinol guidewires with reduced heating” JOURNAL OF CARDIOVASCULAR MAGNETIC RESONANCE Volume: 17 Article Number: 114     
2. Nikolic, Jelena D.; Wouters, Sebastian; Romanova, Julia; Catak, Saron; et al. “PPV Polymerization through the Gilch Route: Diradical Character of Monomers”CHEMISTRY-A EUROPEAN JOURNAL Volume: 21 Issue: 52 Pages: 19176-19185       
3. Hooper, Joel F.; James, Natalie C.; Bozkurt, Esra; Aviyente, Viktorya et al., “Medium-Ring Effects on the Endo/Exo Selectivity of the Organocatalytic Intramolecular Diels-Alder Reaction” JOURNAL OF ORGANIC CHEMISTRY Volume: 80 Issue: 24 Pages: 12058-12075  
4. Pamuk, Uluc; Yucesoy, Can A. “MRI analyzes show that kinesio taping affects much more than just the targeted superficial tissues and causes heterogeneous deformations within the whole limb” JOURNAL OF BIOMECHANICS Volume: 48 Issue: 16 Pages: 4262-4270
5. Dedeoglu, Burcu; Catak, Saron; Yildirim, Asli; Aviante, Victoria; et al., “Cinchona Alkaloid Catalyzed Asymmetric Desymmetrization of meso-Cyclic Anhydrides: The Origins of Stereoselectivity” CHEMCATCHEM Volume: 7 Issue: 24 Pages: 4173-4179
6. Ince, HH; Guests, MOROCCO; Ugur, I; Ozcan, OA; Said, M; Feig, M; Aviyente, V., “Role of the n+1 amino acid residue on the deamidation of asparagine in pentapeptides”, MOLECULAR PHYSICS Volume: 113 Issue: 23 Pages: 3839-3848     
7. Erbay, Tugce Gulsen; Aviante, Victoria; Salman, Seyhan “How substitution tunes the electronic and transport properties of oligothiophenes, oligoselenophenes and oligotellurophenes” SYNTHETIC METALS Volume: 210 Pages: 236-244 Part: B
8. Haliloglu, Turkan; Bahar, Ivet; “Adaptability of protein to enable functional interactions and evolutionary implications” CURRENT OPINION IN STRUCTURAL BIOLOGY Volume: 35 Pages: 17-23
9. Serbes, G; Sakar, BE; Gulcur, HO; Aydin, N., “An emboli detection system based on Dual Tree Complex Wavelet Transform and ensemble learning”, APPLIED SOFT COMPUTING Volume: 37 Pages: 87-94
10. Bingol, HB; Altin, A; Bal, T; Agopcan-Cinar, S; Kizilel, S; Avci, D “Synthesis and evaluation of new phosphonic acid-functionalized acrylamides with potential biomedical applications” JOURNAL OF POLYMER SCIENCE PART A-POLYMER CHEMISTRY Volume: 53 Issue: 23 Pages: 2755-2767
11. Erkol, Hakan; Nouizi, Farouk; Luke, Alex; Unlu, Mehmet Burcin; Gultekin, Gulten; “Comprehensive analytical model for CW laser induced heat in turbid media” OPTICS EXPRESS Volume: 23 Issue: 24 Pages: 31069-31084
12. Basar, B; Rogers, T; Ratnayaka, K; Campbell-Washburn, AE; Mazal, JR; Schenke, WH; Sonmez, M; Faranesh, AZ; Lederman, RJ; Kocaturk, O., “Segmented nitinol guidewires with stiffness-matched connectors for catheterization: preserved mechanical performance and freedom from heating”, JOURNAL OF CARDIOVASCULAR MAGNETIC RESONANCE Volume: 17 Article Number: 105
13. Lumbroso, A; Behra, J; Kolleth, A; Dakas, PY; Karadeniz, U; Catak, S; Sulzer-Mosse, S; De Mesmaeker, A, “Access to functionalized 3-amino-benzothiophenes using lineniminium intermediates” TETRAHEDRON LETTERS Volume: 56 Issue: 47 Pages: 6541-6545
14. Clark, GA; Henderson, JM; Heffern, C; Akgun, B; Majewski, J; Lee, KYC, “Synergistic Interactions of Sugars/Polyols and Monovalent Salts with Phospholipids Depend upon Sugar/Polyol Complexity and Anion Identity” LANGMUIR Volume: 31 Issue: 46 Pages: 12688-12698
15. Bouten, PJM; Hertsen, D; Vergaelen, M; Monnery, BD; Catak, S; van Hest, JCM; Van Speybroeck, V; Hoogenboom, R; “Synthesis of poly(2-oxazoline)s with side chain methyl ester functionalities: Detailed understanding of living copolymerization behavior of methyl ester containing monomers with 2-alkyl-2-oxazolines” JOURNAL OF POLYMER SCIENCE PART A-POLYMER CHEMISTRY Volume: 53 Issue : 22 Pages: 2649-2661
16. Zahertar, S; Yalcinkaya, AD; Torun, H “Rectangular split-ring resonators with single-split and two-splits under different excitations at microwave frequencies”AIP ADVANCES Volume: 5 Issue: 11 Article Number: 117220     
17. Jeweler, F; Erdogan, O; Guclu, B “Electrical nerve stimulation method for intraoperative localization of the inferior alveolar nerve within the mandible: a pilot study in rabbits” INTERNATIONAL JOURNAL OF ORAL AND MAXILLOFACIAL SURGERY Volume: 44 Issue: 11 Pages: 1398-1404
18. Paulsen, JL; Ozarslan, E; Komlosh, ME; Basser, PJ; Song, YQ “Detecting compartmental non-Gaussian diffusion with symmetrized double-PFG MRI” NMR IN BIOMEDICINE Volume: 28 Issue: 11 Pages: 1550-1556
19. Ugur, MH; Kayaman-Apohan, N; Avci, D; Gungor, A “ Phosphoric acid functional UV-cured proton conducting polymer membranes for fuel cells” IONICS Volume: 21 Issue: 11 Pages: 3097-3107
20. Soyman, E; Tunckol, E; Lacin, E; Canbeyli, R “Right-but not left-paw use in female rats provides advantage in forced swim tests” BEHAVIOURAL BRAIN RESEARCH Volume: 293 Pages: 162-165
21. Padan, E; Daniel, T; Keren, Y; Alkoby, D; Masrati, G; Haliloglu, T; Ben-Tal, N; Rimon, A “ NhaA antiporter functions using 10 helices, and an additional 2 contribute to assembly/stability” PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Volume:112 Issue: 41 Pages: E5575-E5582
22. Pokki, J; Parmar, J; Ergeneman, O; Torun, H; Guerrero, M; Pellicer, E; Sort, J; Pane, S; Nelson, BJ “Mobility-Enhancing Coatings for Vitreoretinal Surgical Devices: Hydrophilic and Enzymatic Coatings Investigated by Microrheology” ACS APPLIED MATERIALS & INTERFACES Volume: 7 Issue: 39 Pages: 22018-22028 
23. Deniz, U; Ulgen, KO; Özkirimli, E “Identification of potential Tpx inhibitors against pathogen-host interactions” COMPUTATIONAL BIOLOGY AND CHEMISTRY Volume: 58 Pages: 126-138
24. Soner, S; Ozbek, P; Garzon, JI; Ben-Tal, N; Haliloglu, T “DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex’s Dynamics” PLOS COMPUTATIONAL BIOLOGY Volume: 11 Issue: 10 Article Number: e1004461
25. Pokki, J; Ergeneman, O; Sevim, ; Enzmann, V; Torun, H; Nelson, BJ “Measuring localized viscoelasticity of the vitreous body using intraocular microprobes” BIOMEDICAL MICRODEVICES Volume: 17 Issue: 5 Article Number: 85
26. Kurkcuoglu, Z; Findik, D; Akten, ED; Doruker, P “How an Inhibitor Bound to Subunit Interface Alters Triosephosphate Isomerase Dynamics” BIOPHYSICAL JOURNAL Volume: 109 Issue: 6 Pages: 1169-1178 
27. Sumbul, F; Acuner-Ozbabacan, SE; Haliloglu, T “Allosteric Dynamic Control of Binding” BIOPHYSICAL JOURNAL Volume: 109 Issue: 6 Pages: 1190-1201
28. Acar, Omer; Isik, Esin Ozturk; Mut, Tuna; et al.; “ Comparison of the trifecta outcomes of robotic and open nephron-sparing surgeries performed in the robotic era of a single institution” SPRINGERPLUS Volume: 4 Article Number: 472
29. Akdeniz, ZD; Bayramicli, M; Ates, F; Ozkan, N; Yucesoy, CA; Ercan, F “The role of botulinum toxin type a-induced motor endplates after peripheral nerve repair” MUSCLE & NERVE Volume: 52 Issue: 3 Pages: 412-418
30. Cesur, B; Karahan, O; Agopcan, S; Eren, TN; Octe, N; Avci, D “Difunctional monomeric and polymeric photoinitiators: Synthesis and photoinitiating behaviors” PROGRESS IN ORGANIC COATINGS Volume: 86 Pages: 71-78
31. Alpaydin, E; Cheplygina, V; Loog, M; Tax, DMJ “Single- vs. multiple-instance classification” PATTERN RECOGNITION Volume: 48 Issue: 9 Pages: 2831-2838 
32. Gonzaga-Jauregui, C; Harel, T; Gambin, T; Kousi, M; Griffin, LB; Francescatto, L; Ozes, B; Karaca, E; Jhangiani, SN; Bainbridge, MN; Lawson, KS; Pehlivan, D; Okamoto, Y; Withers, M; Mancias, P; Slavotinek, A; Reitnauer, PJ; Goksungur, MT; Shy, M; Crawford, TO; Koenig, M; Willer, J; Flores; Pediaditrakis, I; Us, O; Wiszniewski, W; Parman, Y; Antonellis, A; Muzny, DM; Katsanis, N; Battaloglu, E; Boerwinkle, E; Gibbs, RA; Lupski, JR “Exome Sequence Analysis Suggests that Genetic Burden Contributes to Phenotypic Variability and Complex Neuropathy” CELL REPORTS Volume: 12 Issue: 7 Pages: 1169-1183
33. Kouhani, MHM; Camli, B; Cakaci, AU; Kusakci, E; Sarioglu, B; Dundar, G; Torun, H; Yalcinkaya, AD “Integrated Silicon Photovoltaics on CMOS With MEMS Module for Catheter Tracking” JOURNAL OF LIGHTWAVE TECHNOLOGY Volume: 33 Issue: 16 Pages: 3426-3432
34. Yoon, SW ; Chen, N; Ducatez, MF; McBride, R; Barman, S; Fabrizio, TP; Webster, RG; Haliloglu, T; Paulson, JC; Russell, CJ; Hertz, T; Ben-Tal, N; Webby, RJ, “Changes to the dynamic nature of hemagglutinin and the emergence of the 2009 pandemic H1N1 influenza virus” SCIENTIFIC REPORTS Volume: 5 Article Number: 12828
35. Kaga, S; Yapar, S; Temporary, EM; Sanyal, R “Photopatternable “Clickable” Hydrogels: “Orthogonal” Control over Fabrication and Functionalization” MACROMOLECULES Volume: 48 Issue: 15 Pages: 5106-5115
36. Sahillioglu, AC; Ozoren, N; “Artificial Loading of ASC Specks with Cytosolic Antigens” PLOS ONE Volume: 10 Issue: 8 Article Number: e0134912
37. Ak, A; Kaya, O; Cosan, DT; Gulsoy, M “Cytotoxic Effects of Different ICG Concentrations and Laser Parameters on Neuroblastoma” ACTA PHYSICA POLONICA A Volume: 128 Issue: 2B Pages: B381-B383
38. Gok, O; Kosif, I; Dispinar, T; Brittle, TN; Sanyal, R; Sanyal, A “Design and Synthesis of Water-Soluble Multifunctionalizable Thiol-Reactive Polymeric Supports for Cellular Targeting” BIOCONJUGATE CHEMISTRY Volume: 26 Issue: 8 Pages: 1550-1560
39. Borklu-Yucel, E; Eraslan, S; Ulgen, KO “Transcriptional remodeling in response to transfer upon carbon-limited or metformin-supplemented media in S-cerevisiae and its effect on chronological life span” APPLIED MICROBIOLOGY AND BIOTECHNOLOGY Volume: 99 Issue: 16 Pages: 6775-6789
40. Ozcan, Z; Gul, G; Yaman, I “Ochratoxin A activates opposing c-MET/PI3K/Akt and MAPK/ERK 1-2 pathways in human proximal tubule HK-2 cells” ARCHIVES OF TOXICOLOGY Volume: 89 Issue: 8 Pages: 1313-1327 
41. Erkol, H; Nouizi, F; Unlu, MB; Gulsen, G “An extended analytical approach for diffuse optical imaging” PHYSICS IN MEDICINE AND BIOLOGY Volume: 60 Issue: 13 Pages: 5103-5121.
42. Boduroglu, A; Pehlivanoglu, D; Tekcan, AI; Kapucu, A “Effects of self-referencing on feeling-of-knowing accuracy and recollective experience” MEMORY Volume: 23 Issue: 5 Pages: 736-747
43. Ozarslan, Evren; Westin, Carl-Fredrik; Marici, Thomas H. “Characterizing magnetic resonance signal decay due to gaussian diffusion: The path integral approach and a convenient computational method” CONCEPTS IN MAGNETIC RESONANCE PART A Volume: 44 Issue: 4 Pages: 203-213
44. Iseri, A; Eksioglu, M “Estimation of digraph costs for keyboard layout optimization” INTERNATIONAL JOURNAL OF INDUSTRIAL ERGONOMICS Volume: 48 Pages: 127-138
45. Zou, N; Chetelat, G; Baydogan, MG; Li, J; Fischer, FU; Titov, D; Dukart, J; Fellgiebel, A; Schreckenberger, M; Yakushev, I “Metabolic connectivity as index of verbal working memory” JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM Volume: 35 Issue: 7 Pages: 1122-1126
46. You; Saraclar, M; Kahya, YP “A Comparison of SVM and GMM-Based Classifier Configurations for Diagnostic Classification of Pulmonary Sounds” IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING Volume: 62 Issue: 7 Pages: 1768-1776
47. Sevim, S; Tolunay, S; Torun, H “Micromachined sample stages to reduce thermal drift in atomic force microscopy” MICROSYSTEM TECHNOLOGIES-MICRO-AND NANOSYSTEMS-INFORMATION STORAGE AND PROCESSING SYSTEMS Volume: 21 Issue: 7 Pages: 1559-1566   
48. Adian, U; Civitci, F; Ferhanoglu, O; Torun, H; Urey, H; “A 35-mu m Pitch IR Thermo-Mechanical MEMS Sensor With AC-Coupled Optical Readout” IEEE JOURNAL OF SELECTED TOPICS IN QUANTUM ELECTRONICS Volume: 21 Issue: 4 Article Number: 2701306
49. Cinar, I; Aslan, OB; Gokce, A; Dincer, O; Caracas, V; Stipe, B; Katine, JA; Aktas, G; Ozatay, O “Three dimensional finite element modeling and characterization of intermediate states in single active layer phase change memory devices” JOURNAL OF APPLIED PHYSICS Volume: 117 Issue: 21 Article Number: 214302
50. Dubner, M; Brittle, TN; Sanyal, A; Spencer, ND; Padeste, C “Fabrication of Thiol-Ene “Clickable” Copolymer-Brush Nanostructures on Polymeric Substrates via Extreme Ultraviolet Interference Lithography” ACS APPLIED MATERIALS & INTERFACES Volume: 7 Issue: 21 Pages: 11337-11345
51. Tezel, U; Pavlostathis, SG; “Quaternary ammonium disinfectants: microbial adaptation, degradation and ecology” CURRENT OPINION IN BIOTECHNOLOGY Volume: 33 Pages: 296-304  
52. Unforgettable, A; Dundar, G; Fernandez, F.V.; “On the convex formulation of area for slicing floorplans” INTEGRATION-THE VLSI JOURNAL Volume: 50 Pages: 74-80   
53. Eksioglu, M; Iseri, A “An Estimation of Finger-Tapping Rates and Load Capacities and the Effects of Various Factors” HUMAN FACTORS Volume: 57 Issue: 4 Pages: 634-648  
54. Yilmaz, Y; Ozturan, C “Using sequential NETGEN as a component for a parallel mesh generator” ADVANCES IN ENGINEERING SOFTWARE Volume: 84 Special Issue: SI Pages: 3-12   
55. Acikgoz, S; Yungevis, H; Sanyal, A; Inci, MN “Humidity sensing mechanism based on the distance dependent interactions between BODIPY dye molecules and gold thin films” SENSORS AND ACTUATORS A-PHYSICAL Volume: 227 Pages: 21-30   
56. Smoke, EA; Canli, T “Influence of life stress, 5-HTTLPR genotype, and SLC6A4 methylation on gene expression and stress response in healthy Caucasian males” BIOLOGY OF MOOD & ANXIETY DISORDERS Volume: 5 Article Number: 2     
57. Lumbroso, A; Catak, S; Sulzer-Mosse, S; De Mesmaeker, A “Efficient access to functionalized cyclobutanone derivatives using cyclobuteniminium salts as highly reactive Michael acceptors” TETRAHEDRON LETTERS Volume: 56 Issue: 19 Pages: 2397-2401     
58. Kalaoglu-Altan, OI; Sanyal, R; Sanyal, A “”Clickable” Polymeric Nanofibers through Hydrophilic Hydrophobic Balance: Fabrication of Robust Biomolecular Immobilization Platforms” BIOMACROMOLECULES Volume: 16 Issue: 5 Pages: 1590-1597  
59. Hanagasi, HA; Bilgic, B; Abbink, TEM; Hanagasi, F; Tufekcioglu, Z; Gurvit, H; Basak, N; van der Knaap, MS; Emre, M “Secondary paroxysmal kinesigenic dyskinesia associated with CLCN2 gene mutation” PARKINSONISM & RELATED DISORDERS Volume: 21 Issue: 5 Pages: 544-546
60. Duman, EA; Kriaucionis, S; Dunn, JJ; Hatchwell, E; “A simple modification to the luminometric methylation assay to control for the effects of DNA fragmentation” BIOTECHNIQUES Volume: 58 Issue: 5 Pages: 262-264   
61. Tekcan, AI; Yilmaz, E; Kiziloz, BK; Karadoller, DZ; Mutafoglu, M; Erciyes, AA “Retrieval and phenomenology of autobiographical memories in blind individuals” MEMORY Volume: 23 Issue: 3 Pages: 329-339     
62. Syrbe, S; Hedrich, UBS; Riesch, E; Djemie, T; Muller, S; Moller, RS; Maher, B; Hernandez-Hernandez, L; Synofzik, M; Caglayan, HS; Arslan, M; Serratosa, JM; Nothnagel, M; May, P; Krause, R; Loffler, H; Detert, K; Dorn, T; Vogt, H; Kramer, G; Schols, L; Mullis, PE; Linnankivi, T; Lehesjoki, AE; Sterbova, K; Craiu, DC; Hoffman-Zacharska, D; Korff, CM; Weber, YG; Steinlin, M; Gallati, S; Bertsche, A; Bernhard, MK; Merkenschlager, A; Kiess, W; Gonzalez, M; Zuchner, S; Palotie, A; Suls, A; De Jonghe, P; Helbig, I; Biskup, S; Wolff, M; Maljevic, S ; Schule, R; Sisodia, SM; Weckhuysen, S; Lerche, H; Lemke, JR “De novo loss- or gain-of-function mutations in KCNA2 cause epileptic encephalopathy” Group Author(s): EuroEPINOMICS RES Consortium NATURE GENETICS Volume: 47 Issue: 4 Pages: 393-U155   
63. Alaybeyoglu, B; Akbulut, B; Özkirimli, E “A novel chimeric peptide with antimicrobial activity” JOURNAL OF PEPTIDE SCIENCE Volume: 21 Issue: 4 Pages: 294-301
64. Devecioglu, I; Guclu, B “A novel vibrotactile system for stimulating the glabrous skin of awake freely behaving rats during operant conditioning” JOURNAL OF NEUROSCIENCE METHODS Volume: 242 Pages: 41-51
65. Goossens, H; Winne, JM; Wouters, S; Hermosilla, L; De Clercq, PJ; Waroquier, M; Van Speybroeck, V; Catak, S “Possibility of [1,5] Sigmatropic Shifts in Bicyclo[4.2.0]octa-2,4-dienes” JOURNAL OF ORGANIC CHEMISTRY Volume: 80 Issue: 5 Pages: 2609-2620
66. Komurcu, G; Pusane, AE; Dundar, G “Enhanced challenge-response set and secure usage scenarios for ordering-based ring oscillator-physical unclonable functions” IET CIRCUITS DEVICES & SYSTEMS Volume: 9 Issue: 2 Pages: 87-95   
67. Rogers, T; Ratnayaka, K; Sonmez, M; Franson, DN; Schenke, WH; Mazal, JR; Kocaturk, O; Chen, MY; Faranesh, AZ; Lederman, RJ “Transatrial Intrapericardial Tricuspid Annuloplasty” JACC-CARDIOVASCULAR INTERVENTIONS Volume: 8 Issue: 3 Pages: 483-491
68. Komurcu, G; Pusane, AE; Dundar, G “An efficient grouping method and error probability analysis for RO-PUFs” COMPUTERS & SECURITY Volume: 49 Pages: 123-131 
69. Baydogan, MG; Runger, G “Learning a symbolic representation for multivariate time series classification” DATA MINING AND KNOWLEDGE DISCOVERY Volume: 29 Issue: 2 Pages: 400-422   
70. Ozturk, D; Yocu, S; Yilmaz, D; Unlu, MB “Influence of vascular normalization on interstitial flow and delivery of liposomes in tumors” PHYSICS IN MEDICINE AND BIOLOGY Volume: 60 Issue: 4 Pages: 1477-1496   
71. Ozturk, H; Ozkirimli, E; Ozgur, A “Classification of Beta-Lactamases and Penicillin Binding Proteins Using Ligand-Centric Network Models” PLOS ONE Volume: 10 Issue: 2 Article Number: e0117874   
72. Ugur, I; Marion, A; Aviente, V; Monard, G “Why Does Asn71 Deamidate Faster Than Asn15 in the Enzyme Triosephosphate Isomerase? Answers from Microsecond Molecular Dynamics Simulation and QM/MM Free Energy Calculations” BIOCHEMISTRY Volume: 54 Issue: 6 Pages: 1429-1439
73. Cinar, SA; De Proft, F; Avci, D; Aviente, V; De Vleeschouwer, F “Relationship Between the Free Radical Polymerization Rates of Methacrylates and the Chemical Properties of their Monomeric Radicals” MACROMOLECULAR CHEMISTRY AND PHYSICS Volume: 216 Issue: 3 Pages: 334-343
74. Goossens, H; Heugebaert, TSA; Dereli, B; Van Overtveldt, M; Karahan, O; Dogan, I; Waroquier, M; Van Speybroeck, V; Aviente, V; Catak, S; Stevens, CV “Elucidating the Structural Isomerism of Fluorescent Strigolactone Analogue CISA-1” EUROPEAN JOURNAL OF ORGANIC CHEMISTRY Issue: 6 Pages: 1211-1217
75. Topaloglu, N; Guney, M; Yuksel, S; Gulsoy, M “Antibacterial photodynamic therapy with 808-nm laser and indocyanine green on abrasion wound models” JOURNAL OF BIOMEDICAL OPTICS Volume: 20 Issue: 2 Article Number: 028003
76. Ozer, N; Ozen, A; Schiffer, CA; Haliloglu, T “Drug-resistant HIV-1 protease regains functional dynamics through cleavage site coevolution” EVOLUTIONARY APPLICATIONS Volume: 8 Issue: 2 Pages: 185-198 
77. Chowdhury, I; Zorlu, O; Walker, SL; Haznedaroglu, BZ “Impact of Growth Phase and Natural Organic Matter on the Attachment Kinetics of Salmonella typhimurium to Solid Surfaces” ENVIRONMENTAL ENGINEERING SCIENCE Volume: 32 Issue: 2 Pages: 111-120
78. Haydaroglu, I; Mutlu, S “Optical Power Delivery and Data Transmission in a Wireless and Batteryless Microsystem Using a Single Light Emitting Diode” JOURNAL OF MICROELECTROMECHANICAL SYSTEMS Volume: 24 Issue: 1 Pages: 155-165
79. Sarioglu, B; Turner, M; Cindemir, U; Camli, B; Dundar, G; Ozturk, C; Yalcinkaya, AD “An Optically Powered CMOS Tracking System for 3 T Magnetic Resonance Environment” IEEE Transactions on Biomedical Circuits and Systems Volume: 9 Issue: 1 Pages: 12-20
80. Flag, AO; Flag, IK; Battaloglu, E; Ozes, B; Yildiz, O; Onar, MK “Ultrasonic findings in hereditary neuropathy with liability to pressure palsies” NEUROLOGICAL RESEARCH Volume: 37 Issue: 2 Pages: 106-111
81. Guclu, Burak; Tandir, Canan; Canayaz, Emre; et al. “Tactile processing in children and adolescents with obsessive-compulsive disorder” SOMATOSENSORY AND MOTOR RESEARCH Volume: 32 Issue: 3 Pages: 163-171
82. Yildiz, Mustafa Z.; Toker, Silk; Ozkan, Fatma B.; Guclu, B; “Effects of passive and active movement on vibrotactile detection thresholds of the Pacinian channel and forward masking” SOMATOSENSORY AND MOTOR RESEARCH Volume: 32 Issue: 4 Pages: 262-272
83. Zou, Na; Baydogan, Mustafa; Zhu, Yun; et al. “A Transfer Learning Approach for Predictive Modeling of Degenerate Biological Systems” TECHNOMETRICS Volume: 57 Issue: 3 Pages: 362-373
84. Dede, HO; Come, O; Baykan, B; Caglayan, H; Topaloglu, P; Gurses, C; Baby, N; Gokyigit, A “Definite Sudep in Dravet Syndrome: An Adult Case Report” JOURNAL OF NEUROLOGICAL SCIENCES-TURKISH Volume: 32 Issue: 3 Pages: 610-616
85. Hatipoglu, B; Ozturan, C “Parallel Triangular Mesh Refinement By Longest Edge Bisection” SIAM JOURNAL ON SCIENTIFIC COMPUTING Volume: 37 Issue: 5 Pages: C574-C588
86. Eksioglu, M “HAND TORQUE STRENGTH IN INDUSTRY A Critical Review” Edited by: Sabuncuoglu, I; Kara, BY; Bidanda, B; INDUSTRIAL ENGINEERING APPLICATIONS IN EMERGING COUNTRIES Book Series: Industrial Engineering-Management Tools and Applications Pages: 81-120
87. Soner, S; Ozturan, C “Generating Multibillion Element Unstructured Meshes on Distributed Memory Parallel Machines” SCIENTIFIC PROGRAMMING Article Number: 437480
88. Kalaoglu-Altan, OI; Sanyal, R; Sanyal, A “Reactive and ‘clickable’ electrospun polymeric nanofibers” POLYMER CHEMISTRY Volume: 6 Issue: 18 Pages: 3372-3381
89. Bilgin, R.; Utkan, MA; Kalkan, E.; et al. DNA barcoding of twelve shrimp species (Crustacea: Decapoda) from Turkish seas reveals cryptic diversity, MEDITERRANEAN MARINE SCIENCE Volume: 16 Issue: 1 Pages: 36-45
90. Arslan, M; Brittle, TN; Sanyal, R; Sanyal, A “Fabrication of poly(ethylene glycol)-based cyclodextrin containing hydrogels via thiol-ene click reaction” EUROPEAN POLYMER JOURNAL Volume: 62 Special Issue: SI Pages: 426-434   
91. Ax, DK; Karahan, O; Avci, D; Arsu, N; “Synthesis, photophysical and photochemical studies of benzophenone based novel monomeric and polymeric photoinitiators” PROGRESS IN ORGANIC COATINGS Volume: 78 Pages: 200-207   
92. Zimon, M; Battaloglu, E; Parman, Y; Erdem, S; Baets, J; De Vriendt, E; Atkinson, D; Almeida-Souza, L; Deconinck, T; Ozes, B; Goossens, D; Cirak, S; Van Damme, P; Shboul, M; Voit, T; Van Maldergem, L; Dan, B; El-Khateeb, MS; Guergueltcheva, V; Lopez-Laso, E; oemans, N; Masri, A; Zuchner, S; Timmerman, V; Topaloglu, H; De Jonghe, P; Jordanova, A “Unraveling the genetic landscape of autosomal recessive Charcot-Marie-Tooth neuropathies using a homozygosity mapping approach” NEUROGENETICS Volume: 16 Issue: 1 Pages: 33-42
93. Bouten, PJM; Hertsen, D; Vergaelen, M; Monnery, BD; Boerman, MA; Goossens, H; Catak, S; van Hest, JCM; Van Speybroeck, V; Hoogenboom, R., “Accelerated living cationic ring-opening polymerization of a methyl ester functionalized 2-oxazoline monomer”, POLYMER CHEMISTRY Volume: 6 Issue: 4 Pages: 514-518
94. Gultekin, Y; Eren, E; Ozoren, N., “Overexpressed NLRC3 Acts as an Anti-Inflammatory Cytosolic Protein”, JOURNAL OF INNATE IMMUNITY Volume: 7 Issue: 1 Pages: 25-36
95. Yucesoy, CA; Turkoglu, AN; Umur, S; Ates, F., “Intact muscle compartment exposed to botulinum toxin type a shows compromised intermuscular mechanical interaction” MUSCLE & NERVE Volume: 51 Issue: 1 Pages: 106-116  
96. Han, Y; Hwang, G; Kim, H; Haznedaroglu, BZ; Lee, B “Amine-impregnated millimeter-sized spherical silica foams with hierarchical mesoporous-macroporous structure for CO2 capture” CHEMICAL ENGINEERING JOURNAL Volume: 259 Pages: 653-662